K27647

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27647

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27647

Determination of introduced cDNA(s)

  • J013145J04 - Rice Full-length cDNAs - Original: J013145J04

    full reading [+] show sequence

    Nucleotide sequence: J013145J04 - full reading 
    TTGGGTACGA GAGGCTATAT GTTGGGCACC GTTTGTGTTC ATCAGCCCAT 
    CACTCTTTTC TGTCTATGTA GGTCATGGCG GTTGCAGGTG CAATGGTGAT 
    GTCAGGTGGC GTGCTCCTTC TCCTCTTGGC TTTCACCTGC GCCGCCTACA 
    ATGACGCCGG CGAGCTGCCG CCGATCAGCC GGAGAAGCTT CCCCAAGGGG 
    TTCATCTTTG GGACGTCCTC GTCGTCATAT CAGTTTGAGG GTGCCGCGGC 
    GAAGGGTGGC AGAGGACCAA GCATCTGGGA CACCTTCACA CATCAGTATC 
    CAGGCATGCT GACTATAAAT GGCCAGAAAT AAAAGGTCAT TACATTATTT 
    TGGATTGACA ATTCTCTAAT TTGGCAGACA AAATCACCGA CAAGAGCAAC 
    GGGGATGGTG CTTGCAATAG CTACCATCTC TACAAGGTAT TGGCAACTAG 
    CATTGACTTT AGTACTCCCT CCATTCCTAA ATGATCTTCA TATTTCACCT 
    AAGCAGCAAG ACCAAGGAGC AGTTACTATC CCATCTATCC GTGCATGTCG 
    CTTCATCAAT TTTGCATGCC GCATGCACCA GCCAATCAGC TATAATGCAT 
    TAATTCCACG CATGCAGCAG CTCCCAACTT AACTCTCACA GAGCCAATGC 
    ATGCATGTAG TGCTGCTTAA TACGAAGCAC CATTATCGTC TACCCATGAT 
    TTCTGCTGCT TCCTAATGAA ATACGAAGGT CAAATTGAAA CTTTTTACTT 
    TTGGTAATGC GAAGATCATT TAGGAATGGA GGGAGTAAGG GTTTTAATTA 
    AATATACACT CCATGTTTGC CAGTCTTCCT CTGCCACAAT CTCTTAAAAC 
    TTTAATTCTC TTCTTTAAAA TGACTAATTT AGTACTCATC CTGAGGCCTG 
    AGGGCCTGAT CACCAAAAAA AATTGCAGGA AGATGTGCGC ATTATGAAGG 
    AGATGGGAAT GGATGCATAC AGGTTTTCCA TCTCGTGGTC AAGAATTCTT 
    CCAAGTACAT GACTATATCT TTTAGAAATA AAATGATAAT ACATCCGTCC 
    CAAAATATAA GGGATTTTGC CCATATAAAT CCCAAATATT TTGGGATGGA 
    GGTAGTAGAT ACAATGCACT GTCATAGATT TACTAACAGA CAGCTTATTT 
    AAAGACATTT TCTCTTTTGT TCTCAAGCAC AATATTCTGC ATTTCTTTTT 
    CAATCTCCAA GGTGATCCCA CCAGGGTTAA AATCTCCCTG TCATGGCAGA 
    TGGAAGTCTC AGCGGTGGAG TCAACAGAGA AGGCATCAAC TACTACAACA 
    ATTTGATCAA TGAACTATTA TCAAAAGAGG TCCAACCATT TGCTACCCTA 
    TTCCATTTTG ATACACCTCA GGCACTGGAA GATAAATATA AAGGATTTCT 
    TAGCCCTAAT ATCATAACTG TTGCAGAAAT GACTATAAGG ACTATGCTGA 
    AATATGCTTC AAAGAGTTTG GTGACCGGGT GAAACATTGG ATCACCTTCA 
    ATGAGCCTTG GAACTTCTGC TCTATGGGCT ATGCATCTGG CACCATGGCA 
    CCAGGCCGGT GTTCATCCTG GGAGAAGGGA AAATGCAGAG TTGGAGATTC 
    AGGAAGGGAA CCTTACACTG CATGCCATCA CCAACTACTT GCTCATGCAG 
    AAACTGTTCG GCTTTATAAA GAGAAATATC AGTTCACTGA AGAAGCTATC 
    AGGCAGTCGC CGTTCATCCG TGATAATAAT TTAAATCGAA GATCTGCAAA 
    GTTAAGTTCC ATAATCCAAA ATTATTTATT GCTTGGCATT CAATTTCAGC 
    TGGGGCCTGG TGGTGGTGGT AGAGTTTTTT CAGTACAGAC ATTAGCGGAT 
    CTTCCATTGT TATTTCTTAT AATTATCTAT AATATAGTAA AACTCGGAAA 
    ACGAACCCCA TAGTCAATAC GGATAAAAGA GGAATCCTAG AATTCTAACA 
    AGAAAAGAAA AACATTTGGC CATTAATCAC TATGTTAAGT ACAGAGGTCA 
    AAATAGGTAA GAGAGATATT TATCTGTTTA TTATGCAAGA CCCTCTAGCC 
    TCAAGAAAAA AACAGAAATC CTATAGACTC TCACATGAAA ACAGAAAATC 
    ATGTCTTAAT CTCGATGCAC CCTGATACAA AGGTCTGGAT CTGTTGATTA 
    GGTCAAAGAT ATCAGATATG TTATTTTATT ATGTATATAC TAAAATACAA 
    TCAAAGGCCT TTAGAGTTGA TATGG

    Gene models with high sequence identity

    1. AT5G44640.1 [+] show detail - beta glucosidase 13
      E-value: 3e-36; Score: 58.20

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 4.9e-17
    superfamily Glycoside hydrolase, catalytic core 6.5e-16
    superfamily Glycoside hydrolase, catalytic core 4.2e-28
    PatternScan Glycoside hydrolase, family 1, active site 0
    Gene3D Glycoside hydrolase, subgroup, catalytic core 7.6e-14
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.4e-10
    Gene3D Glycoside hydrolase, subgroup, catalytic core 6.1e-24
    HMMPanther BETA-GLUCOSIDASE 4.3e-28
    HMMPanther Glycoside hydrolase, family 1 4.3e-28
    HMMPanther BETA-GLUCOSIDASE 3.4e-22
    HMMPanther Glycoside hydrolase, family 1 3.4e-22
    HMMPanther BETA-GLUCOSIDASE 2e-45
    HMMPanther Glycoside hydrolase, family 1 2e-45
    HMMPfam Glycoside hydrolase, family 1 2.4e-18
    HMMPfam Glycoside hydrolase, family 1 2e-14
    HMMPfam Glycoside hydrolase, family 1 1.1e-23

    See the detailed result >

    AT5G44640.1

    Model type
    Protein coding
    Short Description
    beta glucosidase 13
    Computational Description
    beta glucosidase 13 (BGLU13); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 12 (TAIR:AT5G42260.1); Has 11271 Blast hits to 10941 proteins in 1459 species: Archae - 140; Bacteria - 7743; Metazoa - 717; Fungi - 200; Plants - 1456; Viruses - 0; Other Eukaryotes - 1015 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR