K27651

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27651

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27651

Determination of introduced cDNA(s)

  • J033058D01 - Rice Full-length cDNAs - Original: J033058D01

    full reading [+] show sequence

    Nucleotide sequence: J033058D01 - full reading 
    GTCCAATCCA CGCGTCCCCT TTTCCCGTCC CTTCCCTTCC TCCCAAAGCT 
    TCCACAAGAA TCCACCCACT TCAACAATGG CGTCGCCGCC GGACGCCGCC 
    CTCACCGACT ACGAGCGCCT CCGGGAGGAG AACATCCGCC GCAACGACGC 
    CATCCTCGCC TCCCTCCGCC GCAAGGCCTC CGAGCTCTCC GCCGCTATCC 
    AGTCCTCCTC CTCGTCGAAG CGCCCCAAGA AGCAGCCGCC GCCGCCGCGC 
    GCGACCCCGA TCCCCGTCGT CCTCCGCCGC TCCCTCCGCA CCAGGGGCCT 
    CCCCCCCTCC ACCTCCACCT CTTCCTCCTC CGCCGCCTCC CCGCCCGCGC 
    CCGAGTCCCC TCCGGAGGCG CCCTGCAGCA CCCGGCTCTC CTCCTCCCTC 
    GCCTCCGCCA TCCTCGCGGC CGCGTCCGCC TCGCCAGCCG CGCCGCCTCC 
    CGTCCGTGAC GACGGCTTCG ATGCCGGGGC GGAGCTGGTG CTGAGGCCCT 
    CGCACGTGAG GAGGGTGGTG CCGGACAGGA TACTGTCGGT GCGGGTCCTG 
    CCGCTGGTGG ACCGGACCGT GGTGGCGGCG GGGAACAAGC TGGGGAACGT 
    TGGGTTCTGG GACGTGGACG GCGGCGCCGT GGCGGGTGCA GATGGGGTGT 
    TCGAGTATTT GCCTCACAGG GGCCCTGTGG GGGCAATCGT CTCACACCCA 
    GCTACGCCGC AGAAGATTTA CAGCTGTTGC TATGAGGGTG AAATTTGTCT 
    TATGGACCTT GAGAAAGAGA ACTTTAATAT GATCTATCTG ACTGACTATC 
    CTATTTTCTC ACTTTGTCAA GCGCCAAATA GCCCCAGCTC TCTATATCTT 
    GCTGAAGGAA ATGATCTGAA ACTTTTTGAT GAGAGGATGG GTAAGGTGTC 
    AGCCACATGG AATTTACATG ATAATAGAAT CAACTCAATA GATTTTCATC 
    CAGAGAACAC ATATATGCTT GCCACAAGTT CAACGGATGG AACTGCTTGT 
    ATGTGGGATT TGAGAAACAT GAAAGAGAAG GAACCAGAGA GCTTGAAGGT 
    CCTTGAACAT GGGAGATCTG TTCAGTCTGC TTATTTTTCA CCTAGTGGCC 
    GCATGGTTGC AACTACAAGC CTGGATGATA CTGTCCGAAT TTTTAGTGTG 
    GATGACTTCG GCAACTCGAG CATAATGAAG CACAATAACA AGACCGGGAG 
    ATGGCTTTCT ACTTTCAAGG CAATCTGGGG CTGGAATGAC ACTGACCTGT 
    TTATTGGAAA CATGGCGCGG GCAATAGATA TCATTTTGGT TGATCTGAAT 
    GGCAGTAGCC TCTTAGCTAT GAACAACGCA CGTCTCGAGA GCGAACACAT 
    GACGGCCATT CCGGGCCGGT TCTCTGCACA CCCATATAAA GTTGGCCATC 
    TTGCTTGTGC AAGCTCTGGT GGCAAGGTGT TTCTTTGGAC CAGAGCATGA 
    AGCAGCAAGA TCTCCAGTGG CTGGTTCTTT TGACCCAGCT CTTGGTAAGG 
    TGTTAATTTT GACGGTTGCA ACACCTAAGC CTTGTTTCAT GACCCCTCAT 
    GATGAAATGT ATAATAGTAG TAGTTAGTCT GTTCTTGCCT TCTGTTTTCT 
    GACGTTTGAG CTCTTGGAGC TTTCATGTAT CCCTCTAGGG AAAGTTTGTT 
    TAGTATGATT GGAAGCTATG GAGATAATCA TAATATATAG TAGCATTGTT 
    CCTCC

    Gene models with high sequence identity

    1. AT1G80710.1 [+] show detail - DROUGHT SENSITIVE 1
      E-value: 4e-77; Score: 286.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther G-PROTEIN BETA WD-40 REPEATS CONTAINING PROTE 2.4e-14
    HMMPanther WD40 REPEAT PROTEIN 2.4e-14
    ProfileScan WD40 repeat 2 11.712
    ProfileScan WD40 repeat 2 9.606
    ProfileScan WD40-repeat-containing domain 16.19
    superfamily WD40 repeat-like-containing domain 3.9e-38
    HMMPfam WD40 repeat, subgroup 2.3e-07
    HMMPfam WD40 repeat, subgroup 0.00019
    PatternScan WD40 repeat, conserved site 0
    Gene3D WD40/YVTN repeat-like-containing domain 4.5e-34
    HMMSmart WD40 repeat 9.7
    HMMSmart WD40 repeat 6.4e-08
    HMMSmart WD40 repeat 7.3e-05

    See the detailed result >

    AT1G80710.1

    Model type
    Protein coding
    Short Description
    DROUGHT SENSITIVE 1
    Curator Summary
    Encodes a WD
    Computational Description
    DROUGHT SENSITIVE 1 (DRS1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: damaged DNA binding 2 (TAIR:AT5G58760.1); Has 13978 Blast hits to 9952 proteins in 465 species: Archae - 46; Bacteria - 2948; Metazoa - 4636; Fungi - 3015; Plants - 1520; Viruses - 0; Other Eukaryotes - 1813 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR