K27843

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K27843

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K27843

Determination of introduced cDNA(s)

  • J013117J21 - Rice Full-length cDNAs - Original: J013117J21

    full reading [+] show sequence

    Nucleotide sequence: J013117J21 - full reading 
    GCCAAGACTG AAACACTCCG CAGACTGACA CGCTTGCATG GGGGCGGCGG 
    TGGGGAAGGC GGCTCCGGCG AAGGCCCGGC TCGACATTGC CGAGAACACC 
    ATATTCCAGC GGAACCGCGG CATATGGGAC GCGGCGGCCG CCTGCACCAA 
    CGAACGCCTC CTCGACGCGG TCGACGAGAT CCTCGACCTG GCGGAGGCCC 
    AGCCTTTCCC CGCGGCGTCC GCGGCCGCCG CCCGCCCTCG ACAGCGCCCT 
    CCGCGCCGCC ATGTCGCTCA TGATGGACGG GTTCATGTGC CTCAGGGTCT 
    GGAACGCCTC CTCCCATGAC CTGCGCCTCG CCGTCGACAG GCTCGCGGTC 
    GGTGCTTCCG CCAACGCCCT GTGGCAGCAC ACCTTCCCCA GCACCGGCGA 
    CAGGAGCAGC TCGGCGGGCA CCGTGGGGCG CGCGTCGGCC GGAAGCCCGT 
    CGAGTGCCCC TGGCGACTTG GTCGGCTTCT TGGACGGCGA GTTCTTGGAT 
    GAGCTCCAGC TGCTCTGCCC CGCGAGCCTG CTCGTCCTCC ATGAGATCGC 
    GCACCGGGTA ATCCGTGCCG GCTACACGAA GGAGCTCGTC CAGAAATTCA 
    CAAATTCGCC ATGCGATGTT CTGGACAGGT ACGACTATTT TCTTGCAGTT 
    TAACCTACTA TGTTTTTTTT TAATCTGAAC CGTGACTTCT TTGGTTCTAA 
    AGAAACGTTT TGTTTTTACT GTAATCGTGG AACAGGTTCT TGTCGATTTT 
    TCAGGGGGAA TGCTCGCGGC GGACGACAGT GGATCTGATC AAGCGATGGA 
    GCCTGGCGAC TCATCTCGTC GGGAAGGCCC TCGTCGTCAT GCAGCGGCAG 
    CTGTACACGC ACAACTCCCC CGGCGCCTTT GATGCTCTCA AGGACGAGTA 
    CTTCTTGGCC ATCACAAAGA ATCGAATCTT GAACCTGCTC AAGTTCGCAG 
    ACGATTTCAC CAGCATCACG TCGCACGAGA AGCTCATTTA CATCCTTGGC 
    ATGTACCAGG CTCTGAGCGA GGCCGCTTCA GGCCTCCTGC TCATGTTCAC 
    CGGGCCGCAC AAGGAGCTCG TTGCCGAGAG GTCCGAGGAA ATCCTCGCCA 
    AATTGGCTAT GTCGATAAGG TCCATGGTCG CCAGCCTCAT AGCGAAGGTA 
    CGAGACGGTG TCTCGAACAC GAAGAACATC GTCGGCGTCG GCGTCCATCC 
    GCTGACGAAA TACGCCGTGC TCTGCATCGT GCGGCTGGCG CCGCACCGCG 
    ACACGCTCGA CCTGATCCTC GCGAGCGGCG GGGACGACGT AGCGTCGCTG 
    TCCGATCTCG CGTCGCGCGT GGTAGGGTCC CTGGAAGAGA AGCCCGTGCT 
    TCCCTGCGAT GACGACGCGA CGGCGGCGGC GACCGGTTCG CGGCACCACC 
    TCTTCCACGC CAACAACGCC AACTTCGTGC TGCAAAGCTG CAAGCCTCTG 
    CTCGGGGACG AGTGGGCGGC GGCGCGCGAG AGCATCGTGG AGCGGCACGT 
    CGCGGGCTAC GCCGAGGCTT GCTGGGCACC GGTCGTGGCT TGCTTGGAAC 
    CCGCGGGCAG GAAGCCGGCG GCAAAAGTCG TGGCCAAGTT CAGCGCCGCG 
    TTTGACAGAG CGTATGAGAG TCAGGCGCGC TGCGAGGTCC GCGATCCCGC 
    GCTCCGCGAC GCGTTGCGAA GGGCCGTGTC CGACAAGGTC GTGACTGCTT 
    ACGGCGTGTA CCTGAAGACG CACCCCAAGC TCGAGAAAAA ACTCAGGTAC 
    ACCGCCGGGG AGCTGGGCGA GCGGCTTTCG GAATTGTTCG AAGGAGAAGC 
    TGCAGAGCAC AACAAATGAA GGCCGATTTC AACTTTTTTT TTTCAAACTT 
    TTAAATTTTT CGTCGCATCG AACTTTCCTA CACACACGAA CTTCCAATTT 
    TTCAGTTACA TTGTTCCAAT TTCTTCAAAT TTCCAATTTT AGTGTGGAAC 
    TAAACACAGC CAAACAACAG ACTATAGTTG TTTACCATGG ATTCTTTTGT 
    AATAACACAT GTAATTTTAG AAAATAAAGA AGAGTAAGGA AATTCATTTG 
    T

    Gene models with high sequence identity

    1. AT5G03540.3 [+] show detail - exocyst subunit exo70 family protein A1
      E-value: 8e-19; Score: 92.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Exo70 exocyst complex subunit 1.3e-61
    HMMPanther EXOCYST COMPLEX PROTEIN EXO70 2.5e-29
    HMMPanther Exo70 exocyst complex subunit 2.5e-29

    See the detailed result >

    AT5G03540.3

    Model type
    Protein coding
    Short Description
    exocyst subunit exo70 family protein A1
    Curator Summary
    AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into nine clusters on the phylogenetic tree
    Computational Description
    exocyst subunit exo70 family protein A1 (EXO70A1); CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein A2 (TAIR:AT5G52340.1).
    Link
    InterPro Scan - TAIR