K28018

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28018

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28018

Determination of introduced cDNA(s)

  • J023017P18 - Rice Full-length cDNAs - Original: J023017P18

    full reading [+] show sequence

    Nucleotide sequence: J023017P18 - full reading 
    GATTCTGACG TCATCCAAAA TTCCAAATCC ATGGCGACCT CACCGCGATC 
    CCCGCCGGGG GCGCCCCCTC CGCCGGAGTT CGAGATCTCG CGGCAGTCCC 
    GTCTCCTCGC GGCGCTGTCC AAGAAGGTGA TAGATCTCGA TGAGCTGAGG 
    ATGCTGGCTG CTCAGGGGGT CCCTGACGGC GCCGCCGTCC GTCCTACTGT 
    GTGGAAGCTG TTGCTGGGCT ATTTGCCGAG TGATCGTGCC CTGTGGGAGC 
    AGGAGTTGGC AAAGAAGAGA TCACAGTACG CAGCCTTTAA AGAAGAATTC 
    CTTAGCAACC CTATGGAAAT TGCACGGCAA CGGGAATTAG AAGGCCAAGG 
    GAGTGAGAAT GCAGGGAGTA TATATAATGG GTTACTTCAT AGATCAGAGG 
    TTACACAAGA AGAGCACCCA TTGAGCCTTG GGAAGACAAC TGCATGGAAT 
    CAGTTCTTTG AGTATTCAGA GATTATCGAG CAAATTGACC GTGATGTGAA 
    GCGCACTCAC CCTGACATGC ATTTTTTCTG TGGAGACTCA TCTTTTGCAA 
    AGTCCAATCA GGAATCTCTG AAAAATATAC TGATTATCTT TGCAAAGCTG 
    AATGCCGGAA TACGTTATGT ACAAGGGATG AATGAAATTT TGGCACCTCT 
    CTTCTTTGTG TTTCGGAATG ATCCAGATGA TAAAAATGCT AACTTTGCAG 
    AAGCTGATTC TTTCTTCTGC TTCATGGAGT TACTTAGTGG GTTTAGAGAC 
    AACTTCTGCC AGAAACTAGA CAACAGTGCT GTTGGCATTC AAGGTACTCT 
    CTCAAAACTG TCGCAACTTG TTGCGAAGTA TGATGGAGAG CTTCAGCGTT 
    ATTTGGAAAT AACAACAGAA ATTAATCCTC AGTTCTACGC ATTCCGGTGG 
    ATTACGCTAC TGTTAACCCA GGAGTTCAAC TTTGCTGACA CTATTCACAT 
    ATGGGACACA CTATTAAGTG ATCCTGATGG TCCTCAGGAG ACCTTGCTCA 
    GAATCTGCTG TGCAATGCTG ATTCTTGTCC GAAAACGCCT ATTGGCTGGT 
    GATTTCACTT CCAATCTCAA GCTCCTGCAG AACTACCCCC CAACAAACAT 
    CAGCCACCTC CTTTACGTCG CAAACAAGCT GCACTGAACT CAACTGAACC 
    TCGTCTGGAA GACCTGAAAC ACACTACCCC TGCTACAATG TATTCGGTAA 
    AAACTGTGAC TGCATTGCAG AACCACGTAC CATTACGAAT GCTAATCACA 
    GCCAGTCCAT TAATAAAATA ATTTGGATCC CTACCTGCTT GGGATTCCAG 
    TTGC

    Gene models with high sequence identity

    1. AT4G13730.1 [+] show detail - Ypt/Rab-GAP domain of gyp1p superfamily protein
      E-value: 2e-145; Score: 512.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RabGAP/TBC 7.6e-42
    superfamily RabGAP/TBC 5.7e-32
    ProfileScan RabGAP/TBC 29.933
    HMMSmart RabGAP/TBC 1.1e-44
    Coil coiled-coil 0
    Gene3D no description 7.5e-06
    HMMPanther TBC1 DOMAIN FAMILY MEMBER 13 2.8e-140
    HMMPanther TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING P 2.8e-140
    HMMPfam RabGAP/TBC 1.7e-39

    See the detailed result >

    AT4G13730.1

    Model type
    Protein coding
    Short Description
    Ypt/Rab-GAP domain of gyp1p superfamily protein
    Computational Description
    Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT1G04830.1); Has 3916 Blast hits to 3820 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 1945; Fungi - 714; Plants - 575; Viruses - 0; Other Eukaryotes - 680 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR