K28145

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28145

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28145

Determination of introduced cDNA(s)

J033096M08 - Rice Full-length cDNAs - Original: J033096M08

full reading [+] show sequence

GGGGGGTGAC CTTGTGGTTG GGGTGGGGAG CATTGGAAGC GGCGGCGGTG 
ACCCCATCCA TCCCGGACGA CGACGGCGCC GATCCCTCCC GGCCTCCTCC 
CCGTCAGCCG CCACCAAGAT TTGGATCCGA GTCTCGCGAG GAGGGGAACC 
AAGCCGGATT AGTAGTAGGA GTAGTATATT TCTTCTTCTT ATAGATATGG 
ACGGACTGGG ACGGGGTTGA GCAGCAAAGC AATGGACACA GCAGGCGCCG 
CCGCCCACCA CCGCAGTCTT CATAGGTAGT AGCATGCCAG CCAGAAGAGC 
ACACATGGAG GATGGGATCT GTCCAGTAAA CAAAAGGAGG AGATTGGCGC 
TCAGCCCATG TGCTGAAGTA TATAACAGCA AGCGGATAAT ATCACAATGG 
GTTGATTTTC AATCTCTCCC TGAGGACATT CTGTCAAGGA TAATGTCAAA 
ACTAACATTG AAGCAAGCTG TTCAGATGAG CATGGTATCG AGTGTGTTCA 
GAAGAGCTTG GATTTTCCAT CCTGATCTTC TTTTTGGCAC TGAAGAATTG 
TTTGGAACTT CTGATCGACA GTTGAGAGCG CTGAGCACCA ATGGGTTTAT 
TGACACAATC AATTTTATCT TGAGGAAACA CAGTGGTCTA GGAGTGAGTG 
ATTTTGGTGT GAAGTTTGAG CTGTGGAAGG AGCATGCACG TGACATTGAT 
GGATGGGTTT CCTTTGCTAT TGCATCGAAA GCAAGGGTTC TCGTCCTGAA 
CTTTTCTCCA TATATAGGAT TGCGAGAAAA CAGTTACAGC TTTCCATGTC 
ATCTTTTCAA TGACAGAAAT GGATCCCACT TTAAGGTTCT TCAACTTGAT 
ACTGTTACTT TTGGCCCAAC TCCTGACTTT TGTGGCTTTG CTAATCTTAC 
AATGCTTACT TTGAAGCATG TGCTTGTATT GGACAACTTC CAGTACTTCT 
TACCGAAATG CCCTGCCCTA GAATGGTTGG AAATCCTAAT GTGCTCCCAG 
CTACATAATT TGCATGTTTC TGAACCATTG CCGCGGCTGG AATTTTTGCG 
TGTACAAGGT TGTGCGATTA ACAAGATTGA GCTCCATGCC CCCAAACTCA 
CCACATTTGA GTATAGAGGT TGTTTTAAAG TGATTATTGC ACTTCACAAA 
TGCTTGAAGC TTAAGACTGC AAGCATTGCG TCTCATATTG AGGACAACCT 
TGAGTATGTT TTCACTGGGC TTCCAAATGG ATTACCTCAT GTTGAGAGAC 
TACATGTGAA AGTGTTTGTG AGGACTCAGA TACCTGGATT TACACAGCCC 
CCTCTTAAAT TTATCAATTT AAGGCATCTG ATCATGAGGA TAACCTTTGG 
AAGTGCTAAA CGTTTTGGAA AAAACGCAGT TCTGCAGCTA GCATATCTTT 
TGGAAGCTGC TCCTTTGTTA GTGGACCTTC ATTTGGATAT GACGTGTGCA 
GATATTTGTG AGGACCCCCC TGCTAGGGAC GTGATTATAC ATCGCCCCTA 
CTACAATCTC AAGAGAGCTT GCATGACCGG ATTTAATGGT AATGGAGGTC 
AAATTGCCCT AGTAAGATTT ATCCTCAGGA ATGCAGTAAA ATTGGAGAAA 
ATGACTATAG TTCCAAAAGG GAGAAGAACG GGCAAAATGA TGGGAGAATA 
CGAATTAAGC CTTAGAATGA TCAGAAAAAA AATTGTTCCA AAAGACAAGA 
ACGGTGTACT CGTAATTTTG TAGTAATTCT CAAGTTATGT ATGTACTATT 
ATAGGAAGGG CTGGACTTAC ATGCCCTTGT ACTTTTTCAG AAACAATAAT 
AATAGTGCAT CTTTTT

Gene models with high sequence identity

AT1G13570.1 [+] show detail - F-box/RNI-like superfamily protein
E-value: 2e-14; Score: 78.20

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	1.2e-08
superfamily	RNI-like	1.6e-08
superfamily	F-box domain, Skp2-like	1.7e-07
HMMPfam	FBD	9.3e-06

See the detailed result >

AT1G13570.1

Model type: Protein coding
Short Description: F-box/RNI-like superfamily protein
Computational Description: F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2); Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR