K28204

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28204

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28204

Determination of introduced cDNA(s)

  • J023133O15 - Rice Full-length cDNAs - Original: J023133O15

    full reading [+] show sequence

    Nucleotide sequence: J023133O15 - full reading 
    GACCCAGCAG GTTCGCCGTC GCCATGGCGT CCGCCCGCGC CGCGCTCCTC 
    CGCCGCCACT GCCTCGCCGC AGCCGGCGGC GCCAACCCCG TGCTCTTCTC 
    CGGCCATGGC CTCCGCTACC GCAAGCTGGA GGTCATCCTC ACCACGACGA 
    TTGATAAGCT GGGGAAAGCG GGGGAGGTAG TGAAGGTGGC CCCAGGACAC 
    TTCCGCAACC ACCTTATGCC CAAGATGCTC GCTGTCCCAA ACATTGACAA 
    ATTCGCTCTA CTCATCCATG AGCAGCGCAA GCTTTACCAA CGTCAAGAGG 
    AGGAGGTGGT GAAAGAAGTC CGACAAGAAG ATGATGATGC TAAGCAACAG 
    GAAGAGAAAC TGAAGGAGTA TCAAACGGCA GCAAAGTGTC TTGATAATGC 
    TCTCTTGGTG TTGAGGAGAT TCATCTCAGT TGGGAATGAA CTGCGGTCTC 
    CTGTGACAAA GGACGAAATT GTTTCCGAGG TTGCAAGGCA ACTCAATATC 
    AATATCCACC CAGACAATCT TCACCTGCCG TCACCATTGG CATCCCTTGG 
    GGAGTTTGAG CTGCCCCTCC GTTTGCCAAG GGATATACCA CGCCCAGAAG 
    GCAAGCTACA ATGGACTCTA ACGGTTAAGA TCAGAAGAAA ATAAGTACAA 
    TCCATGGGGT AACTTTGTTC CCCCTCCAAG GAGGTGAATG ATACGAAAAC 
    GTTGCAGAAT TCAGAGCAAG AGACTTCAGA TAAGGTTTGC TGCAAAATTC 
    AGTCCCATTT TGAAAATGGT GGACTGCATT CTGCGGTGTG GTTTTTCGAA 
    CCTGCTTATA GACATTCTTG GCCTTTCCTT GAGAGGATGA TCGGTACTAG 
    CCATTTTCAT TCGTGAATAC TGAATAATCT TTCTGGAATA GATATGTTGC 
    AACAGTTTTT AGCAGCCAGA CAGCATGGCC TGTGTATTGT CTACAACGTC 
    GTATTTTGTT

    Gene models with high sequence identity

    1. AT5G53070.1 [+] show detail - Ribosomal protein L9/RNase H1
      E-value: 2e-44; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ribosomal protein L9, C-terminal 3.6e-14
    superfamily Ribosomal protein L9/RNase H1, N-terminal 5.9e-10
    HMMPanther 50S RIBOSOMAL PROTEIN L9 1.9e-14
    HMMPanther Ribosomal protein L9 1.9e-14
    Coil coiled-coil 0
    Gene3D Ribosomal protein L9, N-terminal 2.4e-08
    Gene3D Ribosomal protein L9, C-terminal 5.8e-05
    HMMPfam Ribosomal protein L9, N-terminal 2.3e-14
    HMMPfam Ribosomal protein L9, C-terminal 5.6e-06

    See the detailed result >

    AT5G53070.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L9/RNase H1
    Computational Description
    Ribosomal protein L9/RNase H1; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9 (InterPro:IPR000244), Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Ribosomal protein L9, N-terminal (InterPro:IPR020070), Ribosomal protein L9, C-terminal (InterPro:IPR020069); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR