K28250

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28250

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28250

Determination of introduced cDNA(s)

  • J033125E14 - Rice Full-length cDNAs - Original: J033125E14

    full reading [+] show sequence

    Nucleotide sequence: J033125E14 - full reading 
    GATATAATGC CAGATGAACA CTCCTCTTGC CTCCATCCAC AGGTCAACCT 
    GCAGGCAACC CAGCTTGCTA CCAAGTCGAT CAATGGCAAT GGACACTTAC 
    TACTATTCCA TGCTCTTCGT CCTCCCTCCG ATACTCTACA TGTCCTACCA 
    CCTCACCAGA ATCCTCGCCG ACAAGAAGAA GCCCACCACC CATGGCCTCA 
    AGGCGCACCC GCTGCTCGGC CACCTCCCGG CGTTCGTCAA CAACAGCCAC 
    CGCTTCCTCG ACTGGACGAC GGAGCTCATC GTCGGCAGCC CGGAGATGAG 
    GATGGGCTTC TGGATCCCCG GGATGCGCAC CGGCATCATC ACCGGCAACC 
    CGGCCGACGT CGAGCACATC CTGCGCACCA ACTTCGCCAA CTATCCCAAG 
    GGCGAGCACG CCATTGGCAT GCTCGAGGAC TTCCTCGGCC ACGGCCTCTT 
    CAACTCCGAC GGCGAGCAGT GGCTCTGGCA GCGCAAGAAC GCCAGCTACG 
    AGTTCAGCAA CCGCTCCCTG CGCAGGTTCG TCGTCGACGT CGTGCAGGCC 
    GAGATCGCCG ACCGCTTCCT CCCGCTGCTC CGCCGCGCCG CCGGTGATGG 
    TGGTGGCGAT GGCGATGTCG TCGTCCTCGA CTTGCAGGAG GTGCTCCAGC 
    GATTCGGGTT TGATACCATC TGTATGGTGG CGTTCGGGCA CGACCCGCGG 
    TGCCTCGCCG ACGGCGGGGT CATGGAGGAT GCCAGGTCGG AGTTCATGCA 
    CACCTTCGGC GAGGCGCAGG ACCTCGTCGT CGGCCGCTTC TTCGATCCCA 
    TCGAGGTCTC CTGGAAGATC AAGAAGTGGC TCAACGTCGA CACCGAGCGC 
    CGCCTCAGGA AGGCCATCGC CGACGTCCAC GCCTTTGCCA TGGACATCGT 
    CCGCGCCCGG CGCCAGAGCG CGTCCGTGAA CGACAGAGAC GACGTCCTGT 
    CGAGGTTCGT GGCGAGCGAC GAGCACAGCG ACGAGGTCCT CCGCGACATC 
    GTCCTCAGCT TCCTCATCGC CGGCCGCGAG ACGACGGCGT CGGGGCTGAG 
    CTGGTTCTTC TGGTTCTTGT CGTCCCGGCC CGACGTCGTG GCGCGCATCG 
    CCGACGAGGT CCGCGCGGTG AGGGAGGCGA CCGGCACGCG CCCCGGCGAG 
    CCGTTCCGGT TCGACGCGCT CCGGGAGATG CACTACCTCC ACGCCGCGCT 
    CACCGAGTCG ATGCGGCTGT ACCCGCCGGC GCCGATCGAC TCGCAGTCGT 
    GCGCGGCGGA CGACACGCTC CCCGACGGCA CGCTCCTCCG CGCCGGCTGG 
    TCCGTGACGT ACAGCGCGTA CGCCATGGGG CGTCTCGCCG CCATCTGGGG 
    CGAGGACTGC TTGGAGTACA GGCCGGAGCG GTGGCTCGGC GACGACGGCG 
    CGTTCCAGCC GGCGAGCCCG TTCCGGTTCA CGGTGTTCCA CGCGGGGCCG 
    AGGATGTGCC TCGGGAAGGA GATGGCGTAC GTGCAGATGA AGTCCATAGT 
    TGCAAACGTG CTTGAGGAGT TCGAGGTCGA CGTGGTCAAG GACGTCGCCG 
    GCGGCGGCGT GCCGGAGCAC GTGCTCTCGG TGACGCTGAG GATGAAGGGT 
    GGACTACCTG TGAAGATTAG GAGAAAGACT GAAGCTTACT AGAGAAGGCC 
    ACAAGGGAAC TTTGCCGCTG AATGGTATAA TTAGTTAAGC TTCAAGTTTT 
    GCTCTTTTCG TTTTGAGCTT ATGGGTTAAG AATAACGTTT GTGATTTGGT 
    TGTTTTGCCC ATTTTCCATT TCCTACTAGA CTACAGCGGC AGAAAAATGA 
    TTTGCCCTGG GTTGAATTGA TGCCAGTTAA TCAATAAAAG GATGGCGTAT 
    CACTGTATTG TACAAATTTA ACAAGTTGAA GTCAGCCATG TAAGACACAA 
    ATAGACCTAT TTAAGTAACT ATTTGACC

    Gene models with high sequence identity

    1. AT3G56630.1 [+] show detail - cytochrome P450, family 94, subfamily D, polypeptide 2
      E-value: 1e-126; Score: 451.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrome P450 4.3e-66
    PatternScan Cytochrome P450, conserved site 0
    FPrintScan Cytochrome P450, C-terminal 1.6e-10
    FPrintScan Cytochrome P450, C-terminal 1.6e-10
    FPrintScan Cytochrome P450, C-terminal 1.6e-10
    FPrintScan Cytochrome P450, C-terminal 1.6e-10
    FPrintScan Cytochrome P450, E-class, group I 5.5e-10
    FPrintScan Cytochrome P450, E-class, group I 5.5e-10
    FPrintScan Cytochrome P450, E-class, group I 5.5e-10
    FPrintScan Cytochrome P450, E-class, group I 5.5e-10
    Gene3D Cytochrome P450 1.4e-92
    superfamily Cytochrome P450 2.4e-96
    HMMPanther CYTOCHROME P450, SUBFAMILY 86A, B 5e-179
    HMMPanther Cytochrome P450 5e-179

    See the detailed result >

    AT3G56630.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 94, subfamily D, polypeptide 2
    Curator Summary
    member of CYP94D
    Computational Description
    "cytochrome P450, family 94, subfamily D, polypeptide 2" (CYP94D2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 94, subfamily D, polypeptide 1 (TAIR:AT1G34540.1); Has 28588 Blast hits to 28499 proteins in 1478 species: Archae - 44; Bacteria - 2617; Metazoa - 10641; Fungi - 6172; Plants - 8084; Viruses - 3; Other Eukaryotes - 1027 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR