K28325

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28325

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28325

Determination of introduced cDNA(s)

  • J013158I15 - Rice Full-length cDNAs - Original: J013158I15

    full reading [+] show sequence

    Nucleotide sequence: J013158I15 - full reading 
    GGTCTTTGAG GCCATCGGCA GCGAAAGCGA CTTGGTCGAG ATTATAGGTC 
    TGGTTGTAGA GCATGTTGCG CTGTTCTTCG TACCTTGAAA CAGGCAACGT 
    ACATTCATCA GAGTTGCATA GTGGAGTAGT AGCAAATACT CTACTAGTAG 
    TAGAATAGTG AGTAAGAGTA GAGTAGAGTA CATGCGCTTG TGCTTGAGAA 
    GCCTGATGGC GCGGGCCTTA ATGGCGTCCT GGGAGGGTCC AGGGCGTGTC 
    TTCCTGATCT GCTCCTTGTA ACGGCCGAGC TCTTCGTCCA GCTTCTTGAT 
    CTTGTCGTCC ACGCTCTCCC CCCTCTTGTT GATCTTCAAT CACATACACA 
    TAGAGAGGAA ATGTTCAAAC TAAGAGAGAT GGCGTGCGAG CAAATGGCCT 
    AGACGAGGAG AATACTCGTT CGGTAGCGTC CTGGATGGAT GGGGCGGGTC 
    CTTGCTCTTC TTGGCTCCAA AGATCTTCTT CATTTCCGGC GCGTGTGTGC 
    GGCGGCGGCG GCGGCGGCGG CGGCAGCGGC AGCGAGGAGA GAGAGTGTTG 
    GGAGTGAGAT GAGATGGAGA AGGGGAATGG GGGACGGGAG GTTGGGCTCC 
    ATGCTGAATT CTGCTGTGGA TTGGTCCAGG GAAGGCCCTA TCCGGCATAC 
    CATTAATCGG ATTTGATTTC ATTCCCTTTC TCCTCCTTAG TCATACTCCC 
    TCCCTTCCAT ATTTGACTTA TTTTTTCTTA GTTAATTTTT TAGCTTGATC 
    AAATTTATAG AAAAACTAAA CACTATCTAT GACATCAAAT TATTTTTATT 
    AAATGTAGCA TAAAATACAT TTTGATAGTA TGTTTGTTTT CTGCT

    Gene models with high sequence identity

    1. AT3G10640.1 [+] show detail - SNF7 family protein
      E-value: 2e-26; Score: 50.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Snf7 2.6e-07
    Coil coiled-coil 0

    See the detailed result >

    AT3G10640.1

    Model type
    Protein coding
    Short Description
    SNF7 family protein
    Computational Description
    VPS60.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1); Has 1147 Blast hits to 1145 proteins in 230 species: Archae - 3; Bacteria - 8; Metazoa - 447; Fungi - 307; Plants - 230; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR