K28326

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28326

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28326

Determination of introduced cDNA(s)

  • J013158G10 - Rice Full-length cDNAs - Original: J013158G10

    full reading [+] show sequence

    Nucleotide sequence: J013158G10 - full reading 
    GTTCCTCTCC TCTCTTCTCC TCTCCCGCCG CCGCCGCCGC CGCACCCGCC 
    GATCTCCATC CTGCGAGCAG CGGCGGCGCT CCACCTTTCC CTCCCCAAAT 
    TTCAAAACTC GATTCGAAAT CTGCCACGCT TTATTCCCGC CATCTCATTC 
    TCACCTACCC AATTGTCTCC TCCTCCTCAA ATTTAGGTTG AAAAAGATAT 
    TCCCGGCGCC TCCCCACAAT CAGCTAGCTC TACAAATACC TCCCGCATGA 
    GCTCCATTTG CGCCATGAGA TCCCTCCTCG CCGCCTCCAC CTTCCTCCGC 
    TCCGGCGCTT CCCCTCTGCT GCGGCCCCTT TCCCGTCCTC TCCCTTCCCG 
    CCTGAATCTT TCCCGATTCG GTCCGGTGAG GCCGGTCTCT GCGGCGGCGG 
    CGGCGGCGGA CAAGTCTCGA GGCGGAGGCG GCTCCGCGAT GGAGGCCCAG 
    CCGTCGTATC CCGGTGAGAT TCACGTCATC GTGGGCCCCA TGTTCGCCGG 
    GAAGACCACT GCCCTTCTCC GACGCGTGCA GGTCGAGGCC GGCACTGGCA 
    GGAACGTGGC ACTCATCAAG TCTGACAAGG ACAATAGGTA TGGATTGGAT 
    TCTGTCGTAA CTCATGATGG CACAAAGATG CCATGCTGGG CTCTACCTGA 
    GCTTTCAAGT TTCCAAGATA AATTAGGAAC AGAGGCTTAC GATAAGGTTG 
    ATGTCATAGG TATTGATGAA GCACAGTTTT TTGACGATCT TCATGATTTC 
    TGCTGCAAAG CTGCTGACCG TGATGGAAAA ATTGTTGTAG TCGCAGGGCT 
    AGATGGTGAC TACAAAAGGA ACAAATTTGG GTCAGTTCTG GACATTATAC 
    CCTTGGCTGA CTCGGTCACC AAGCTCACCG CACGCTGTGA GTTGTGCGGT 
    CGCCGTGCAT TCTTCACGCT GAGGAAGACA CGGGAAACTA AGACCGAGCT 
    CATTGGAGGA GCTGATGTGT ACATGCCTGT ATGTAGGCAA CACTACCTGG 
    ATGGTCAAAT TGTCATTGAG GCCACAAGGA TTGTGCTGGA TCTTGAAAAA 
    TCCAAGGTTA TCCATGCTTT CAAGTGAGTG AATAGCTCAT TGTATCCTTT 
    TTACTTGCAA GGCTTACCAT GTGTAACACT ATCATCATCA ACCATGCAAT 
    CCATCTAGTT ATCGTAGAAG ATGATGGAAA GACCACAATA TTCAGAGACT 
    CTCCATTAAA CGATTGTAAA TATGTATCAG TCCAGATTCT GTTGGGAATG 
    AATTTTATCT TGGTTTGTGG ATGGAGGAAT T

    Gene models with high sequence identity

    1. AT3G07800.1 [+] show detail - Thymidine kinase
      E-value: 2e-78; Score: 290.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Thymidine kinase 2.4e-55
    HMMPanther Thymidine kinase 3.2e-79
    PatternScan Thymidine kinase, conserved site 0

    See the detailed result >

    AT3G07800.1

    Model type
    Protein coding
    Short Description
    Thymidine kinase
    Computational Description
    Thymidine kinase; FUNCTIONS IN: thymidine kinase activity, ATP binding; INVOLVED IN: pyrimidine deoxyribonucleoside interconversion, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidine kinase (InterPro:IPR001267), Thymidine kinase, conserved site (InterPro:IPR020633); BEST Arabidopsis thaliana protein match is: Thymidine kinase (TAIR:AT5G23070.1); Has 4049 Blast hits to 4037 proteins in 1500 species: Archae - 38; Bacteria - 2547; Metazoa - 142; Fungi - 7; Plants - 74; Viruses - 356; Other Eukaryotes - 885 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR