K28328

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28328

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28328

Determination of introduced cDNA(s)

  • J013090K12 - Rice Full-length cDNAs - Original: J013090K12

    full reading [+] show sequence

    Nucleotide sequence: J013090K12 - full reading 
    GCAGGTTGTT CCAAAAATTT GGGAGTTCGA ACTTCGAACG ACTCGGCGCT 
    CCATTCTGCC CACCGGCGGT GATCTCCACC CCCGCGGAGA TGGGAACGGA 
    GGCCGCAGCT CCGGCGAGGG CCATGGGCCC CACCAAGCTC GCGTACTTCG 
    ATGACATGTG GGCCCTCAGC TCCACCGCCA CCGTCGTCTC CCTCCTCCAG 
    GAGGAGGGGG GCCGGCGAGC GGTGTTGGTG GACTCCACCG TCTTCTACCC 
    GCAGGGCGGC GGCCAGCCGG CCGACACCGG CGTCATCTCC GCTGGCGGCG 
    GCACCAGGTT CATCGTCGAT GATGTGCGGA TGAAGGATGG AGTGGTTTTC 
    CACTATGGGA GATTTGAGGA TGCTGGAGAT GGATGCAATT CCGGGTTCAG 
    TGAAGGGCAG AGCGTTAGCT TGGAAGTCGA TGCGGAACGC CGCAACTTAA 
    ATTCCAGGCT TCATTCTGCA GGGCATTTGA TAGACATCTG CATGAGCAAT 
    ATTGGCTTAT CACATTTCGA CCCTGGGAAA GGACATCATT TCCCTGATGG 
    ACCTTTCGTT GAGTATAAAG GAGTCATTCC ACCAGATCAG TTGCAGGATA 
    AGAAAAACGA GTTGGAAAAA GAAGCAAATG AGTTAATTAC TAAAGGAGCA 
    AAAGTATTAG CTTATATTTT ACCTTATGAG GAGGCAGCTC AATTGTGTGG 
    AGGTGCTCTG CCTAGCTACA TTTCAAAAGA TAGCACCCCT CGCATTGTGA 
    AATTTGGTGT TTATCCTGGT GGCCCTTGTG GTGGTACACA TGTTGCCGAT 
    ATCTCTATCA TCAACAACAT AAAGGTCACA AACATAAGAG TCAAGAAAGG 
    CCTCACCAAA GTCTCCTACA GTGTCAGTCT ATGATTCTTT TTACCCATGC 
    ATTTGGCACC TGGAATTTGT CAGAGGAGTG AAGAGGCAAA CATTCAGTGA 
    AATCAGAAGG CTGATACCAA ATGATTTTTT TAAAAAATCT ATGTTTAGAC 
    AAAGAGTAAT TACATGTAAT ATTTTGGAAA GCACTGTTAG TTCTATGCTA 
    AATTTCGTGT CACATCACTA TATGTAACTT CCTGTACCAC CATGGACTAT 
    ATGTGTCTTT TTCCTGAATT ATATCCAGGA AATTGTACTA GATTAGATTT 
    GCTGGTTTAA TCTTCAGATT GTTGTTCTG

    Gene models with high sequence identity

    1. AT3G16565.2 [+] show detail - alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;n...
      E-value: 4e-76; Score: 282.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Alanyl-tRNA synthetase, class IIc, core domain 14.518
    HMMPanther ALANYL-TRNA SYNTHETASE 2.2e-11
    superfamily Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain 2.1e-21
    HMMPfam Alanyl-tRNA synthetase, class IIc, N-terminal 2.1e-11
    HMMPfam Threonyl/alanyl tRNA synthetase, SAD 0.00023
    Coil coiled-coil 0

    See the detailed result >

    AT3G16565.2

    Model type
    Protein coding
    Short Description
    alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding
    Computational Description
    alanine-tRNA ligases;nucleic acid binding;ligases, forming aminoacyl-tRNA and related compounds;nucleotide binding;ATP binding; FUNCTIONS IN: ligase activity, forming aminoacyl-tRNA and related compounds, alanine-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: alanyl-tRNA aminoacylation, tRNA aminoacylation, translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc, core domain (InterPro:IPR018165); BEST Arabidopsis thaliana protein match is: Alanyl-tRNA synthetase (TAIR:AT1G50200.1); Has 8903 Blast hits to 8903 proteins in 2729 species: Archae - 421; Bacteria - 5979; Metazoa - 328; Fungi - 222; Plants - 105; Viruses - 0; Other Eukaryotes - 1848 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR