K28439

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28439

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K28439

Determination of introduced cDNA(s)

  • J033058I10 - Rice Full-length cDNAs - Original: J033058I10

    full reading [+] show sequence

    Nucleotide sequence: J033058I10 - full reading 
    GACCTCAGTC AGACATCGTC CTCTCCATCG CCGCTAAGGT CTTCGCCGCC 
    GCCACCGCCG CCGAGAGGGG AGGCCGCCGA CTTCAGCGAT GCCGACGGTG 
    AGCGTCGGCC GGGACCGCTT CTTCGTCGCC CTCGGAAGGA CATACACGCA 
    GGAGGAGTTC GAGGTGCTCT GCTTCGAGTT CGGCATCGAG CTCGATGACG 
    TGACCACGGA GAAGGCCATC ATCCGGAAGG AGAAGCACCT GGAGGATGAT 
    GACGGCGAGG TGGATGGTGA TGACGACGAG GTCATCTACA AGATCGAGGT 
    CGCCGCCAAT AGGTATGATT TGTTATGTCT TGAAGGATTG GCAAGGGCCC 
    TCCGCATTTT CACTGGGACT GAAGCGACCC CTATGTACAA AATTTCTTGC 
    ATCCCTCGCG ATTCAATGCT TCTGATGCAT GTTAAACCTC AGACTTCACA 
    AATAAGGCCC TATGTGGTCT GTGCTGTCCT TAGAGGGGTA ACTTTCGATG 
    AAGCAAGATA TAACAGCTTC ATCGATCTTC AAGACAAACT CCATCAAAAT 
    ATTTGCAGGA AGAGAACTCT GGTGGCCATA GGTACCCACG ATCTTGACAC 
    TCTGAAAGGA CCCTTTTCAT ATGAGGCTCT ACCACCACAA GAGATCAACT 
    TTGTCCCATT AAAGCAGGAG GAAAGCTTCA GGGCTGATAA ACTGATGGAA 
    TTCTATAAAT CAGACATGAA GTTGAAGAAG TTCCTGCATA TAATTGAGAA 
    TTCGCCAGTA TACCCAGTTA TTTATGATAG CAACAGGACC GTATTGTCTT 
    TACCACCAAT CATCAATGGT GCACATTCTG CTATCACTCT GAAGACAAGG 
    AATGTGTTTA TTGAGTGTAC CGCTACTGAC CTTACAAAAG CAAAGATTGT 
    TCTCAATACA ATGGTCACAA TGTTCTCTGA GTACTGCGAA AACAAGTTTG 
    AAGTGGAACC AGTTGAAGTT GTGTCACATG ATGGAAGCAA AACCATTTAC 
    CCTGACCTTT CATGCTATAA AATGGAGGTC TCACTATCTG AGGTTGTTGG 
    ACCCATTGGC ATCTCCCTAG ATGAGACAAA GGTTATTTCC CTTCTGAACA 
    AAATGCAGTT GCAAGCTGAA AGTTGTCCAT CAAAAGGGGA ACCACGTATT 
    TCAGTTTCTG TCCCTCCAAC AAGAAGTGAC ATTCTGCATG CTCGTGATTT 
    GGTGGAGGAT GTTGCTATAG CTTATGGTTA CAACAATGTG CCAAAATCAA 
    AGCCAAAGTG TATGACAATA GGAGGAAGGC AACCATTAAA CCGTTTCTCT 
    GATAAACTTC GTGCTGAGGT TGCAAGAGCT GGTTATATGG AGGTGCTCAC 
    ATTTACCTTG TGTTCACGTG AAGAAAACTT TGACATGTTA AATAGGACAC 
    AGGATGTAAA TAAAGCAGTT ATTATTGCGA ATCCACGCAC TTCTGAATTT 
    GAGGTGGTTC GAACCAGTCT GATGTCATGT TTATTGAAAA CTTTGAAGCA 
    TAACATAGAC CATCCAAGAC CCATAAAGAT ATTTGAAGTT GGTGATGTAG 
    TGACATTGGA TGGGTCACGT GATGTTGGTG CTTCTAATAA TCGTCGACTC 
    GCAGCTTTGT ACTGTAATAA GCAGTCTGGG TTTGAGGAAA TTATGGGTTT 
    GGTAGATAGA ATCGTGAATG TTGTGAGAGC TCCCCACATC AAATTTGGCC 
    AGAATTACTA TGTTCCTACA AATGAACCTG AATTCTTTCC GAAAAGACAA 
    TGCAAAATTG TTATGAGTGA TGGAAAGCAG ATTGGCTACT TAGGAATTGT 
    GCATGCCGAG GTCCTAAGGA AATTCGGCAT TCCAGACCCC TGCACTTTCG 
    TTGAGATTGA CGTTGAGGCT TTGTTATAGT ACCACCTGCT GTCAGTCAGG 
    ATGTGCTTGC TTTGTTCATT TAGCATGCGT GGAGTATCTA ACAGATCAAG 
    CATTTGAGTT TGAACACCGC ATGTAATTGT AGAATTCATA ATTGCATATT 
    TTTTTGTTCG GGAAGAAATA GAAAATGGCG ATGCCCTTTT TTGCCAAACA 
    GGCCGTGGGG TCATGTTTAC CTTGTTCCCA TTGTGTAATT TTACATCATT 
    GCTGGCACAG GTTTTTTATT TATAAAATGG ATATCTAAAA TGATTTTGTG

    Gene models with high sequence identity

    1. AT1G72550.1 [+] show detail - tRNA synthetase beta subunit family protein
      E-value: 0; Score: 753.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN 5.8e-156
    Gene3D tRNA synthetase, B5 7.8e-08
    Gene3D no description 1.4e-32
    superfamily Class II aaRS and biotin synthetases 2.2e-47
    superfamily Putative DNA binding domain 5e-16
    superfamily Putative DNA binding domain 5.3e-11
    HMMSmart B3/B4 tRNA-binding domain 8.9e-31
    HMMSmart tRNA synthetase, B5 5.9e-13
    HMMPfam B3/B4 tRNA-binding domain 1.9e-20
    HMMPfam tRNA synthetase, B5 7.9e-14
    HMMPfam Phenylalanyl-tRNA synthetase alpha chain 1.7e-07
    HMMTigr Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic 7.3e-169

    See the detailed result >

    AT1G72550.1

    Model type
    Protein coding
    Short Description
    tRNA synthetase beta subunit family protein
    Computational Description
    tRNA synthetase beta subunit family protein; FUNCTIONS IN: phenylalanine-tRNA ligase activity, RNA binding, magnesium ion binding, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: phenylalanine-tRNA ligase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Putative DNA binding domain (InterPro:IPR009061), tRNA synthetase, B5 (InterPro:IPR005147), Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic (InterPro:IPR004531), B3/B4 tRNA-binding domain (InterPro:IPR005146); Has 6477 Blast hits to 6464 proteins in 2647 species: Archae - 257; Bacteria - 4445; Metazoa - 257; Fungi - 153; Plants - 56; Viruses - 0; Other Eukaryotes - 1309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR