K28506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Elements::Others::K

Original: K28506

Determination of introduced cDNA(s)

J013112F11 - Rice Full-length cDNAs - Original: J013112F11

full reading [+] show sequence

GAGTTCGCCC GCCGCCGCCG CCGCCGATCC CCATCCATCC CGCGAGGCGC 
GAGCGAGCAG GGCGCCGTCG GCGCCGTCGT TCGTCATGCT GCTTCCGCCG 
CATCCAGGCA GAACATTACC AGCCTATCAT GGAGACAACA GATTTCTTCT 
TGGAGCTTGT TTCCTGAGTA AACTGCCTAT GCTGCGCCCA ATGAAGTTGT 
CTTTGGTATG CAGTGCTAAT CCCAACAACC ATAGGTCAAG AAGTTCGGAT 
ATCACACGCC ATCAGAAGGG TGGATCAGCT CGGAGGAAAA GTAAGCCTTA 
CCAGGAGAAA GATGACTCTG AGAATATTGA TGAATTCGAT ACTGATATTA 
TGTCCTCCAA AAATGGACCA CCCATCTCTT TGACAAGCAA TTCCCGTCCT 
CAAGCAACAT CAGTCCCAGG GGAAAGAGAG AAGGAGATAG TAGAGTTGTT 
TAAAAGGGTT CAAGCACAAT TGCGAGCAAG GGGAAAAGGG AAGGAGGAGA 
AGAAGCCTGA ACAAGCAAAA GCACAGGGTG AGAGGGGCAG TGTTGACTCC 
CTTCTAAATC TGCTTAGGAA GCACTCAGTG GACCAACGAA GGAAGAGCGG 
TGATGAGAAA GAACAGAGTG TTGACCAAAC AAAGAGAAGC AATGAATCTG 
GAAATAAACA AAATTCAAGC ATCTTCATAA AGAATGACAC TCAGGAAGAA 
CAGAAAAAGC CACATCCTGC AGCCTTCAAA AGGCCAGCTT CAAATTTTAG 
GCGAAGATCC CCTGTTCCTA ATGTAAAGTT CCAGCCTGTT ACCAATGTTG 
ATGCCGAACG AGTCATCAAT AACATCAATG ATGCCGTACA AGAGGCTAAG 
CCAACTTTGG AAAATAAGGC TGCTACAGAT GAACCAGACT CGGTTTCTAC 
ATTCGAACCT AATTCTGTAA TAGAACCAGA AAACCTATCT TTGGATGACC 
TTGATCATAT TTCAGATGAT GAACCTGATG CTTCTGATAC TGATGAACCC 
AGTGGAGAAT ATGATGAGCC ATCTTTGCAA ATCCCAAGTG TTCCAATTAT 
TGATGAATCT CATGATACGA CTCTGAAATC TTCCTTAGGA GGTCCTGATT 
TAAGCACTTT GAAGGTCACA GAACTAAGAG AACTTGCGAA ATCTCGAGGA 
ATCAAAGGAT ATTCCAAGAT GAAGAAGAAT GACCTGGTTG AACTGCTGAG 
CAACATGGCT TGATCCATCA GCAGCCCTGT CAACTTGGCT CTGTTTTGTC 
CCTTGTTAGT CACATTGTCT TGGGCATATG CACTATCTTG CCATTCCTAT 
CTTATCTAGA TGAAGTTCTT TTAGGTAGAA AACTGTAAAT GAGCAAGGTA 
AACAATGTTC TGTTCTGGTT TTATCGTTGC CCTTTCTGTT ACCTAGCCTC 
TAGTTACCAT TGTTTTTGCG TAAATCCTTC ATCAGAATTG AACCCTGGAT 
TGGCCATAAG ACTGGCAACG ATTCGACGTC ATGCTGATTA TGTTCTGATG 
TGTAGTGTTC TATTCTTATC TCTGTTGTTT CTCCTTTCTC ATGGCAGCTC 
TTGTCTGCTG TTGCATGGTT TCTCTCGTTT ACATCCATGG TTGTTACTGA 
ACGTTTGATG CACAAGTCTT TTGTGTGTTC ATGAAAAGAA TAAGCAGAAG 
CAACCTATAA TGGATTTCTT TGGTGTTCAA TCGTTTACTG TCTTTGTTCA 
GAGCCAAGGT ACTGATTGGG AGGATTTCCT GGGAATTGTC TGCCTCCCGA 
TTATCAATTC AACAATCAGC TTCATTAAGG AAAACAATGC AGGCGATGCA 
GCTGCTGCAC TCATGTCCCG GTTGGCGCTA AAAACAAAGG TTCTTAGAGA 
TGAGCAGTGG CAAGAGCTTG ATGCTTCCAC ATTGGTACCT GGGGATATAA 
TCAGCATCAG GTTTGGTGAC ATTGTCCCTG CAGATGCGTG CCTACTTGAG 
GGAGATCCTC TGAAAATGAA TTGCCACACG CCGTTCATGC GAAAGATGTC 
GATCACTGGA ATGTCAGACT AGTTGCTCCG TGTAAATAAT TTGATCACAT 
TTTTGTTTGT CCTTCATCTT GTAGTCAGCT CTCACTGGTG AATCCCTTCC 
TGTCACCAAA AGAACCGGGG ACCATAGTGT TCACTGGCTC AACATGCAAG 
CATGGTGAGA TTGAAGCTGT TGTCATTGCA ACTGGGATAC ACTCTTTCTT 
TGGCAAGGCA GCTCATCTAG TGGACTCCAC TGAGGTTGTT GGGCATTTTC 
AGAAGGCAAC TTCTGTATCT ACTCAATCGC CATTGGTGTG ATTGTTGAGG 
TTATAATCAT GTTCCCAATC CAGCACCGGT CATACCGAGA TGGGATTACG 
ACTTCCCTCT GTTTATGGTT CTGATCATAG CCATACTAAA TGATGGTGAC 
GATCATTTCT CTCTGAATTT TACTGTTTCT GAAGCATAAA TATATAGGTT 
CGGCATCTGC TTTGATCAGG AACTATCATG ACAATATCAA AGGATCGCGT 
GAAGCCATCA CCAAGCCCAG ATACTTGCAG CTGGAGTTGT CATCGTAGCC 
TACCTTGCAT TGGTCACCAT GCTGTTCTAT TTGTAACTCC TCAATAGGCT 
TCATGTCTGC ACATTACCAG AAGCAAATTT TCAGATGATT GCATAAAATA 
GATAACAAAA CAAAGTATGA TGATCAGCAA GGCTGATATC AGCTTTGCGT 
TTTCTTCTCC TTATCACAAA GAATGCAAGG ACTGCCCCAG AGCTTCCACC 
AAAACATGAA CCACCATTGT CTTGACCTGG GCTGTTTGGA CGGTTTGGTG 
GAGGGGGGAG CTGTATATGA TGGAGGTGGT GGATTTCCGT CAATTCTGTA 
CACAAGGATC ATAATAGAGA TCAGCGAGTT TCAGCTACTA GTTCCATGGA 
GCTCGTACTG CTCGTGCGTG TGTACTTCCT TTAGGTGGTA TAACTTGCGA 
CAGAGGTTCT TTTGCTCCTC AAGTACAGGC CCAAGTTGGG CCACAAGTTG 
CGTGCCCACA AGCAAAAAAA AAAAAATCAC CTGTGAAAAG GTAATGCCAA 
GTGCTAACGA CTTGGATTGG TCGCTGTAAA CTCACGAAAT GCATAGTAAT 
ATGCATTTGT GCTTTCACGT CAGTAAGATG TGATGGGTGC CTAACCCAGG 
CCGTGCTAAT CCTATCTGTT AGTTTATCTG TTGACTACTG TGCATCATTT 
TGTCCAACTT TTTTTAGAAT TACACTATTT TGTCCATTTT GTGTGTGCGT 
GCATTGGTCT ATGACGTATG GATGACCATA ATGAAGTTAG TACTGTTG

Gene models with high sequence identity

AT5G57350.2 [+] show detail - H(+)-ATPase 3
E-value: 7e-50; Score: 85.50

InterPro Scan Digest

Program	Description	E-value
HMMPfam	ATPase, P-type, ATPase-associated domain	3.9e-17
HMMPfam	Rho termination factor, N-terminal	2.1e-10
HMMPfam	ATPase, P-type, ATPase-associated domain	8e-09
HMMPanther	SAP-LIKE PROTEIN	2.1e-211
HMMPanther	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	2.1e-211
HMMPanther	SAP-LIKE PROTEIN	1.9e-16
HMMPanther	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	1.9e-16
HMMPanther	SAP-LIKE PROTEIN	2.6e-56
HMMPanther	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	2.6e-56
Gene3D	no description	7.8e-10
superfamily	Calcium ATPase, transduction domain A	2.5e-10

See the detailed result >

AT5G57350.2

Model type: Protein coding
Short Description: H(+)-ATPase 3
Curator Summary: member of Plasma membrane H+-ATPase family
Computational Description: H(+)-ATPase 3 (HA3); FUNCTIONS IN: ATPase activity, hydrogen-exporting ATPase activity, phosphorylative mechanism; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 2 (TAIR:AT4G30190.1).
Link: InterPro Scan - TAIR