K28533

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28533

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28533

Determination of introduced cDNA(s)

  • J013157B01 - Rice Full-length cDNAs - Original: J013157B01

    full reading [+] show sequence

    Nucleotide sequence: J013157B01 - full reading 
    GGTGCTCTGC CTCCCTCTCC CTTCCCACGC CGTCTCGCCG CAATCGCTCG 
    CTCGGTCGCC TCCTCTTCCG CCGCGAGACA CGAAGAGCAG CAGCTCACAG 
    GTAGGCCTGC GCGTCGGCGG CCATGGGAGA CAGCCAGTAC TCCTTCTCCC 
    TCACCACCTT CAGCCCGTCG GGGAAGCTGG TGCAGATCGA GCACGCGCTC 
    ACCGCGGTCG GATCCGGCCA GACGTCCCTC GGGATCAAAG CTGCTAATGG 
    TGTAGTTATC GCCACTGAGA AGAAATTGCC TTCTATTTTA GTCGATGAAA 
    CATCTGTGCA AAAGATTCAG TCATTGACTC CGAACATTGG AGTTGTCTAC 
    AGTGGGATGG GTCCCGATTT CCGTGTTCTT GTGAGAAAAA GTCGGAACAA 
    GCACAGCAGT ATTATCGGTT GTACAAGGAA ACTATCCCTG TTACTCAGCT 
    TGTCCGAGAA ACTGCTGCTG TTATGCAGGA GTTCACACAG TCTGGTGGTG 
    TAAGACCATT TGGAGTATCA TTATTGATTG CCGGGTACGA TGACAATGGC 
    CCACAGCTGT ATCAGGTTGA TCCCTCAGGA TCATACTTCT CCTGGAAAGC 
    ATCAGCTATG GGGAAAAATG TCTCCAATGC AAAGACATTT CTTGAAAAAA 
    GATACACAGA AGACATGGAG CTTGATGATG CCATCCATAC TGCCATTTTG 
    ACTCTGAAAG AAGGATATGA GGGTCAAATC TCAGCCAACA ATATTGAAAT 
    TGGAGTTATT CGATCTGACC GTGAATTCAA AGTTCTAACC CCGGCAGAGA 
    TCAAGGATTT CTTGGAAGAG GTGGAGTAAA TTGTCTGTTG ACATTTGATA 
    GTTTACTGTT CTAAGTGACA CTCTTGAGCC GTAGTCATGA GGCTTCTTGT 
    CTCTTACCAT TTGTCACTTA AACCTATTGT AAACTGATTT GCTTCAGTGA 
    TATGCATGAG GTGAAGTGGT GGACCTACTT TTGAATCCC

    Gene models with high sequence identity

    1. AT1G79210.3 [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
      E-value: 6e-68; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 1.4e-42
    superfamily N-terminal nucleophile aminohydrolases (Ntn h 8.6e-29
    HMMPanther PROTEASOME SUBUNIT ALPHA TYPE 2 2.1e-97
    HMMPanther PROTEASOME SUBUNIT ALPHA/BETA 2.1e-97
    HMMPanther PROTEASOME SUBUNIT ALPHA TYPE 2 2.3e-57
    HMMPanther PROTEASOME SUBUNIT ALPHA/BETA 2.3e-57
    PatternScan Proteasome, alpha-subunit, conserved site 0
    HMMPfam Proteasome, subunit alpha/beta 1.1e-39
    HMMPfam Proteasome, subunit alpha/beta 1.6e-16
    HMMPfam Proteasome, alpha-subunit, conserved site 2.1e-10
    Gene3D no description 5.4e-41
    Gene3D no description 8.9e-26

    See the detailed result >

    AT1G79210.3

    Model type
    Protein coding
    Short Description
    N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
    Computational Description
    N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: defense response to bacterium, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: proteasome subunit PAB1 (TAIR:AT1G16470.2); Has 6770 Blast hits to 6769 proteins in 496 species: Archae - 887; Bacteria - 41; Metazoa - 2415; Fungi - 1555; Plants - 857; Viruses - 0; Other Eukaryotes - 1015 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR