K28612

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28612

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28612

Determination of introduced cDNA(s)

  • J013106H04 - Rice Full-length cDNAs - Original: J013106H04

    full reading [+] show sequence

    Nucleotide sequence: J013106H04 - full reading 
    GGCTGGAATT CAGGGTAGCG CTAATGCTAC CAACAATAAA GCCTTGGGTG 
    CCGTTCTGAA TCAGCAATTT GTCATACAGC TTGGCCTCTT CACTGCCTTG 
    CCAATGATTA TAGAGAACTC TCTTGAACAG GGTTTTCTGC CTGCTGTCTG 
    GGATTTTTTT CACTATGCAA ATGATGTTTT CGTCCGTGTT CTACACATTT 
    TCCATGGGGA CGAAAAGCCA TTACTATGGC CGGACAATTC TTCATGGCGG 
    TGCTAAGTAT CGTGCTACTG GCCGTGGTTT TGTTGTGCAG CATAAGAGTT 
    TTGCTGAAAA TTACAGGCTG TATGCTAGGA GCCACTTCAT AAAGGCAATA 
    GAACTTGGAA TAGTATTGAC TGTGTATGCA GCTCACAGTG TGATTGCAAG 
    GGATACACTT GTTTACATAA TCATGATGAT ATCTAGCTGG TTTCTAGTGG 
    TATCATGGAT CATGGCTCCA TTTGCTTTTA ATCCATCTGG CTTTGATTGG 
    TTGAAAACAG TGTATGACTT TGATGATTTC ATGAACTGGA TCTGGTACCC 
    TGGTAGTATC TTTTCTAAGG CTGAACACAG CTGGGAAGTT TGGTGGTTTG 
    AGGAGCAGGA TCATCTACGA ACAACTGGTC TTTGGGGAAA GATTTTAGAA 
    ATATTGTTAG ATCTCAGATA CTTCTTTTTT CAGTATGGGG TTGTATACCA 
    GTTGAAGATC GCAAATGAAA GCAGAAGTAT TGCTGTTTAT CTGCTTTCCT 
    GGATTTGTGT GGCTGTGATT TTCGGCATTT TTGTCCTAAT GTCATATGCT 
    CGAGACAAGT ATGCTGCAAA ACAACACCTT TACTACCGGG TCATCCAATC 
    TGGTGTCATT ATTCTTGCAG TGCTAGTGCT GATAATATTT CTGAAATTTA 
    CTAAATTTCA AATCATTGAC ATCTTCACAA GCCTTTTGGC ATTCATTCCT 
    GGTTGGGGCT TGATTTCCAT TGCTCAAGTG ATTAGACCAT TCATTGAGTC 
    TACTGTGGTC TGGGCCAGTG TTGTTTCTGT GGCACGTTTG TATGAGATAC 
    TGCTTGGGGT GTTTGTTATG GCGCCAGTTG CATTCTTTTC CTGGTTGCCT 
    GGATTTCAGG AAATGCAGAC GAGGGTACTT TTCAATGAAG CTTTCAGCAG 
    AGGCCTCCAG ATATCCCGCA TTCTTGCTGG CAAGAAAACA ATTGCAGTTT 
    GAGGCTCTAA CAAGGTTATC GCAGTTAGGC CGTCCTCCGT CACCTCTGTA 
    CAGCTTCTTA TGCAATGTGG AAGGCTTTCT GTTTACTGAT ATAGCTTAGA 
    TCCATATTGA ACCTTTTAGA TGGCTGATTA GCTTCAGTCA TCTTACTCTA 
    GATGTTCAGA TTTGTACTGA GTAATTTAGG CCTCTCCAGT TTTGCACCTT 
    CTTAGAGCTA GTTGTATGTA GATGATTCTG TTGCAGCATT ACCCGTGAAC 
    TCTAATGGCT TGTTTGTTAA CCTGGCTGGA TGTTCCATTT TTTGCGCCTG 
    G

    Gene models with high sequence identity

    1. AT4G04970.1 [+] show detail - glucan synthase-like 1
      E-value: 8e-148; Score: 81.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycosyl transferase, family 48 9e-06
    HMMPfam Glycosyl transferase, family 48 8.4e-48

    See the detailed result >

    AT4G04970.1

    Model type
    Protein coding
    Short Description
    glucan synthase-like 1
    Curator Summary
    encodes a gene similar to callose synthase
    Computational Description
    glucan synthase-like 1 (GSL1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: reproduction, 1,3-beta-glucan biosynthetic process, pollen development; LOCATED IN: 1,3-beta-glucan synthase complex, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440); BEST Arabidopsis thaliana protein match is: glucan synthase-like 5 (TAIR:AT4G03550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR