K28701

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28701

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K28701

Determination of introduced cDNA(s)

  • J023142C17 - Rice Full-length cDNAs - Original: J023142C17

    full reading [+] show sequence

    Nucleotide sequence: J023142C17 - full reading 
    GCTCCTTCCC TCCCGCCGTT GCCAACCACC CCCTTCCCCT CCCCCCTCGC 
    CCTCGCCGCC GGCGGCCGTC TCGTCGTCGG TGAGACCTAG AGAGCCAAAC 
    AGCGCGTTGG TTGTTGAGCT CGGAGAGGGA GAGAGAGAGA GAGAGAGGAT 
    GGAATTGGAG TCGGAGCAGC ACGGCTGCGA GCATTACACG AGGGGATGCA 
    GGATCAGGGC GCCGTGCTGC GGCGAGGTGT TCGGCTGCAG GCATTGCCAC 
    AACGAGGCCA AGAATTCGCT CGAGATCCAT CTCAATGACC GTCACGAGAT 
    CCCCCGCCAC GAAATCAAGA AGGTTATCTG CTCTCTCTGC GACAAAGAAC 
    AGGATGTACA ACAGTACTGT TCTGGTTGTG GGGCATGCAT GGGGAAATAC 
    TTCTGCGAAA AATGCAACTT CTTTGATGAT GATGTCTCAA AGAACCAGTA 
    TCACTGCGAT GGATGCGGCA TATGCAGAAC TGGTGGTGTG GATAAGTTCT 
    TTCACTGCGA CAAATGCGGG TGTTGCTACA GTAATGTCTT GAGGGATTCT 
    CATCACTGTG TAGAAGGAGC AATGCATCAC AACTGTCCTG TCTGCTTCGA 
    GTACCTATTT GACTCGACGA AGGACATCAG CGTCTTGCAC TGCGGGCACA 
    CGATCCATCT GGAATGCCTG AACGTGATGA GAGCGCATCA TCACTTCGCT 
    TGCCCGGTGT GCTCACGGTC GGCCTGCGAC ATGTCGGACG CGTGGAAGAA 
    GCTCGACGAG GAGGTGGCCG CGACGCCGAT GCCGGAGTTC TACCAGAAGA 
    AGATGGTCAG TAAAACACCA AACATTTCTC CAAAATCTCG TGTGCCATTC 
    TTCAGTGAAC ATTTTTTTAG ATAATGGAAA TGGATTACAT CTCCGGCCTC 
    TGCTCGTAGG CACACAACTA AAAAGTCCAG AAGTGAATAG AAAAGAGCTT 
    AAAAAAAGAC GAGATGGGAC AAACCCTCAA CTTCTACCAA TAATATGATC 
    TACTAAAATA ATGTTTCTAA AATCATGTAG ATTCTATCAC AAAATTCTGT 
    AGGTACTACG CCATCCAGAC TGGAATAAAA GTTCTTTGGC TACCT

    Gene models with high sequence identity

    1. AT5G22920.1 [+] show detail - CHY-type/CTCHY-type/RING-type Zinc finger protein
      E-value: 2e-102; Score: 369.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 11.398
    ProfileScan Zinc finger, CHY-type 25.287
    ProfileScan Zinc finger, CTCHY-type 34.558
    HMMPfam Zinc finger, CHY-type 1.5e-16
    superfamily RING/U-box 2.8e-12
    HMMPanther RING FINGER AND CHY ZINC FINGER DOMAIN CONTAI 2.5e-101
    HMMSmart Zinc finger, RING-type 1.7e-05

    See the detailed result >

    AT5G22920.1

    Model type
    Protein coding
    Short Description
    CHY-type/CTCHY-type/RING-type Zinc finger protein
    Computational Description
    CHY-type/CTCHY-type/RING-type Zinc finger protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G25560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR