K28702

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28702

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28702

Determination of introduced cDNA(s)

J033110E07 - Rice Full-length cDNAs - Original: J033110E07

full reading [+] show sequence

GCCCGAACTG TTCGTTCCCT GCCTCACTGG TAGCGGCGCT TGTCAAGCGC 
CGCCATTGCA GGACGAGCGA AGCCCTAAAG ATCGACACCG TCACGGCGGC 
GGAAGGGGGA GGAGCGTCGT GGCGACCCGC TGCTCCCCGT GCCCGTCCGC 
TCCAACTCTC CAGAAACCCT AGATGTTCGA CAATTGCGAG GTCACTATAA 
TCGTCTCTGG AGCGATGCAT CGTGCTAAAA AGGCAAAGGT GGAACCATCA 
TCTGCGTTGA GGTCAGACAA ATTCAGCAGC CTACCTCAAG AGATAAAGGT 
CACCATCCTC TCCAAGCTGA ATTCCTTAGA TGCTATTAGA GCCAGCATCC 
TATCCAGTGC TTGGAGGAAT GTGTGGACTA CTTTGCCAGA AATATATCTT 
TGTGATTTGT ATCTCAGCTG GGGTTCCTCT GAAACGACAC AACGCTCCAA 
CTTTATTACG CTCGTCGATC TGGCCCTTTT GCTCCACAAT GGACCTCTTG 
CTTCCTTTTC AATTCTAGGG TTCAAAAGAT ACCATGATGT ATTTGATAGT 
GGATGTACAT GCTGTCAAGG AAAAAACCAA GGTCCATTAC AATCAAGTTT 
TACTCTGGGC ATAACTATAA GATCCCGTCA AACCTCTTCT CTCTCAGTGA 
TTTGGAATAT CTGCAGATAA AAAGATGCAT CATCGGTTTG CCTCAGGAGT 
TTGAAGGTTT CAAGCGGCTA ACTGTCCTGA ATCTGAAATA TTTCTCCTCA 
ACAGACAGTG ACATAAATAA TCTGATCTCC TCATGCCCCT TGCTGAGTAC 
ATTATGTTTG AAATATTTCG AGGGTATCAC TTGTCTCAGT ATTCAAGCTC 
CAGCACTGCA GGATTTAGAG GTTAAAGGGA ACTTTCAAGA TTTTCATCTG 
CATGCACCTA ATCTGTCCAA TTTAGATGTT TCACTTGACA AAACAGAAGC 
CCAACAATCT GTTGTAGTTG AAGGCAACAG GAAAAATTAT CTGAAGCAAG 
CTATGGTCAG CCTAACTAGC ATAGTAAGAC TTGTTATGAA AAGATGCATC 
ATTGCCTTGC CTCAGGAGTT TGAAGGTTTC AAGCAGCTAT TTGTCTTGAA 
TCTGAAATAT TTCTCCTCAA CAGACCATGA TATAAATACT CTGGTCTCCT 
CATGCCCTTG GTTGAATACA TTGCGTTTGA AACATTTCGA TGGTATCAGT 
TGTCTCCGTA TTGAAGGCCA GGTACTGCAG ATTGTAGAGG TTGAAGGGAA 
ATTTGAGGAC TTTCATCTGA ATGCACCTAA TCTGTCCCAT GTGTATATTA 
CACTCGACAA AACAGAAGCC CAACAGTCTG TGGCAGTTGT AGGTGACATG 
AAAAACTACA TGAAGCAAGC TTTTGTCAGC CTAACTAGTA TAGAAGAACT 
TACTATAAGT GGCTCATTCT TGACGTATCT ATCCAAAGGG TGCTTGTCGA 
TGCAACTCCC AGGTGTGTTT GATCATCTGA AGAAGATTTG TATTGAGAAG 
TGCTTTTGGA ACTGGACAGA GGTCTTGGGT GCTTGTTCAA TATTTCAGAA 
TGCCCCTACT TTCAGAGAAC TTGAGATATG GAGCTTCCCA CGTCCAGAAG 
CTTATAGGCG TAAGACAATA TGGGATCAAG ATCAGACGGA GATTGAAGAG 
CCTACCTTGC ATCACCTCGT GACAGTGGCC ATAAACGATT TCGTGGGGCT 
CAACTGCGAG GTTGCTCTTG TTGGACTGCT ACTGAGCTGG TCACCTGCTT 
TAGAGGATCT GAAGATATTC AGGGCCAAGA ACGTTAACGA TGAATACATG 
TGCATTTGCA AGGGTCTTAC CAAGTTACTG GCTCTCCCGA GGGCGTCTAG 
CAAAGCCAAG ATCACTGTCA TCTGATTCAT GTACATCCAG GTCATTCGGC 
TGCGTTTTTG CTTCATATCG ACGTTTGCTT GTGGCAGAAC TACTGCTGTT 
AGTCTGTGTC CTTGGATTTT GGGGGTTATG CGTTAAATCT AAATCTTAGT 
AGTCTGTTAA TTCGCTCCAT CTTCCCTTTG AACTAGACAT GCTTTGCTCA 
GAATGAATGT TCTTGGTTGG AGAATTGCCA TGTCTCTTCT GTTCGTTCAA 
CAAACTAGAA GTCGGTCAGC AAGCTCCATT TACTTCAAAT GTTTGCGACT 
TGATATTTCA AGATGAAAAA TATAATACTA GTGGTTGATC

Gene models with high sequence identity

AT1G13570.1 [+] show detail - F-box/RNI-like superfamily protein
E-value: 9e-27; Score: 61.60

InterPro Scan Digest

Program	Description	E-value
superfamily	RNI-like	3.3e-18
superfamily	F-box domain, Skp2-like	2.8e-10
HMMPfam	F-box domain, cyclin-like	9e-05

See the detailed result >

AT1G13570.1

Model type: Protein coding
Short Description: F-box/RNI-like superfamily protein
Computational Description: F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G56370.2); Has 1866 Blast hits to 1838 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1866; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR