K28720

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28720

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28720

Determination of introduced cDNA(s)

  • J033068L17 - Rice Full-length cDNAs - Original: J033068L17

    full reading [+] show sequence

    Nucleotide sequence: J033068L17 - full reading 
    GAGACGCACG CGCACACGCA TACGCATCGC AGCCAGTTCA TCCTCGATTC 
    CTCCCCCGAA TTTCCTTCGC GATCTCACCC CGCGTGCCCT AGCTAGCTAT 
    CGAATCCCGT CACCTCGGCG GCGGCGGCGA GATCGGAGCT CCGGGTTAAC 
    CTCCTCCACC GCGAGGCGTG GAACCTCTCT CTCTCTCGCT CTCTCCACCT 
    GAGGATCGAA GATCGAAACC CCTGGCACCG GCTCGGGCCG CGGAATGGGC 
    GGCCGCGGTG AGTAGCTAGG TCTGCGGCGG CGGAGTTGTT GTTGTTGGTG 
    GTGGTGGTGG TGGAGGAGGA GTTGGCGGCG GAGGGGGCGG GGGCGTTGGT 
    GGTGGTGGTG GTGGGAGAGT ATCATGGTGC AGTGTCTCGA CGGGGTGAGG 
    CAGCTGCTGG CGGTCGTGTT CAAGTGCTGC GACCTCGAGC TGAAGCAGCC 
    GCGGGGGCTC GAGGATCCCC AGGTCCTCGC GAGGGAGACC GTCTTCAGCG 
    TGAGCGAGGT CGAGGCGCTG TACGAGCTCT TCAAGAAGAT AAGCAGTGCT 
    GTGATTGATG ACGGGCTGAT TAACAAGGAG GAGTTTCAGT TGGCGCTGTT 
    AAAGACCAGC AAGAAGGAGA GCCTGTTCGC CGACCGTGTA TTTGATTTGT 
    TTGACACAAA ACACAATGGA ATTTTAGGAT TTGATGAATT TGCTCGTGCA 
    CTCTCAGTAT TTCATCCAAG TGCTCCACTT GATGAGAAGA TTGACTTTTC 
    ATTCCAGTTA TATGATCTCA AGCAACAAGG CTATATTGAG AGACAAGAGG 
    TTAAGCAGAT GGTTGTTGCT ACACTTGCTG AGTCTGGAAT GAATCTTTCT 
    GATGAAATTA TAGAGAGCAT AATCGATAAG ACATTTGAGG AGGCAGACAC 
    AAAGCATGAT GGAAGAATTG ATAAAGAAGA GTGGCGCAAT CTGGTTCTTC 
    GTCATCCCTC TTTGCTGAAG AACATGACTC TCCAGTACCT CAAGGACATC 
    ACCACTACAT TTCCAAGCTT TGTCTTCCAT TCCCAGGTCG ATGACACCTG 
    AATTCTTGGA TTTGTTTGAA CTCAAACCAT CAGAAGAATG CTCATGCCGG 
    TTCATTAAGA ATTTTGATAT TGGGTTGTTG GATTGGGCAG AGACTCCAGA 
    GCTCTGTAGG ATGTTGCATG TTCGATTTGA GAAGTTCTCA AATCTTTAAA 
    TTGATGTAAC TTTGTTTCTT TCGTTTGGAA GTTTAGTGTG GCTGGAGACT 
    TTCGGGGAGA TGTTAAATTT CTGTCTGAAT CCGTAGATCC TTTATTCTCT 
    TCCCCTCTTT TCTGTTTTTC TGGCTAGCAA TCAGAATATC TTTTCTGTTT 
    TTTTGGCTAG CAATCAGAAT ATCGGATATA GTTTTGTGAA TCTTTCATTT 
    TGCGTACAAA ATAGGAACCT TCAAAAAAAT TGATCGTGCT GGAAAATGTT 
    CTGTTGGAGT TTGCAAATTG CAATGATCAT GAAATGCTCT CCTTTTTTGA 
    GAGTTTGCAC C

    Gene models with high sequence identity

    1. AT4G26570.1 [+] show detail - calcineurin B-like 3
      E-value: 2e-108; Score: 390.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Recoverin 1.5e-05
    FPrintScan Recoverin 1.5e-05
    FPrintScan Recoverin 1.5e-05
    Gene3D EF-hand-like domain 9.2e-54
    superfamily EF-hand 1.3e-48
    HMMPanther Calcineurin B protein 5.8e-140
    HMMPanther CALCINEURIN B 5.8e-140
    HMMSmart Calcium-binding EF-hand 2
    HMMSmart Calcium-binding EF-hand 7.7
    HMMSmart Calcium-binding EF-hand 0.83
    ProfileScan EF-HAND 2 11.473
    ProfileScan EF-HAND 2 10.58
    ProfileScan EF-HAND 2 11.445

    See the detailed result >

    AT4G26570.1

    Model type
    Protein coding
    Short Description
    calcineurin B-like 3
    Curator Summary
    member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins)
    Computational Description
    calcineurin B-like 3 (CBL3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Calcineurin B protein (InterPro:IPR015757), Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 2 (TAIR:AT5G55990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR