K28813

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28813

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28813

Determination of introduced cDNA(s)

  • J033123D13 - Rice Full-length cDNAs - Original: J033123D13

    full reading [+] show sequence

    Nucleotide sequence: J033123D13 - full reading 
    GAATCTAATC ACTCCTCCCC TCTTCCACCC TCCCCCCACC TCGTCGCCTC 
    GCCGTCTCCA CCCCCAAAAC CCTAGCCGCC GCCGCGCTCC TCCTCCTCCG 
    CCGCCGCCCG GCGCCGCCCG CGGCCATGGA TCTCCTCCGC TCGCACCTCC 
    ACAAGGTCCG CATCCCGGAG CCCGGCAGCC GCATCCACAA GGACGAGTGC 
    TGCGTCTCCT TCGACACCCC GAGGTCGGAG GGTGGGCTGT ACGTCGACAT 
    GACCTCGTTC CTGGGGTTCG GGAGGGAGCA CGTGGCGTGG AACTACGAGA 
    AGAGTGGGAA CCCCGTGTAC CTCCACATCG TGCAGCGCCG GAAGCCGGAG 
    CCCGACGACG AGGCGGATCG CCCGCTGAAG AAGCCCACGC TACTCGCCAT 
    CGGAGTGGAG GGAGGTTTCA CTGATCAAGA ACCCGAATAC GATGAGGCTT 
    TTGAAATTGT TATCTTGCCT GAATTTACTT CTCTCCCTTT TCCATCAATT 
    GACTTGCCAG AGAAGGTTAG GATTGCAGTT GACAAAGTTA TACTTGCCGA 
    AAGTGCTGAT CGAAAACAAC AATTGGCTTC TTGGGTTGCT GACAAGAAAA 
    AAGTCAGTGC ACATGCTATG GATCTGAAGC AGCTAGACAA TGGTGTCATT 
    GTGCCACCTA CAGGATGGAA GTGCAGCAAG TGTGATAAAA CTGAGAATCT 
    CTGGTTAAAT TTAACTGATG GCATGATCCT ATGTGGGAGG CGGCTTTGGG 
    ATGGAAGTGG GGGGAATAAT CATGCTATTG AACACTACGA ACAGACTAAA 
    TATCCTCTTG CGGTAAAGCT TGGAACAATT ACTGCTGATT TAGAAGCAGC 
    AGACGTTTTC TCATACCCAG AAGATGATAG CGTTGAAGAT CCACTATTAG 
    CGCAGCATTT GTCACATTTT GGTATTGATT TTTCTTCACT CCAAAAGACC 
    GAGATGACTA CTGCTGAAAG AGAGCTTGAT CACAACACAA ATTATGACTG 
    GAATAGAATA CAAGAAAGTG GCAAAGATGC CGAACTTTTA TACGGCCCTG 
    GTTATACTGG CCTTGTAAAT CTTGGAAATA GTTGCTATAT GGCCTCAGTA 
    ATGCAAGTTA TGTTTTCAAC TCATCCTTTT ATATCACGCT ACTTTGAGAA 
    GCAGAGCTTG AAAGCTGCAT TTGCAATTGC CCCAGCTGAT CCAACATTGG 
    ACTTGAACAT GCAAATGACA AAGTTGGCTC ATGGAATGCT CTCTGGCAAA 
    TACTCTGTGC CAAATCAGGA GGGACAAGAA GGAATACACC CTCGTATGTT 
    TAAGACAGTT ATTGCTGCAA AGCATCCCGA ATTTTCCAGT ATGAGGCAAC 
    AGGATGCGCT TGATTTCTTC CTTCATCTTA TTGACCAAGT TGATCAGGCA 
    AACACCGGAA ACCATGAGCT GAATCCTTTT ACAGGGTTCA AATTCTTCAT 
    TGAGGAGCGT CTTCAATGCC CTTCTGGAAA AGTCTCCTAT AACAAACGTT 
    CTGACTACAT TCTTTCTTTG AACATACCGT TACATGAAGC TACTAACAAA 
    GAGCAGCTAG AAGCATTTCA TGAGAAGAAA GCTGCAATGG ATTTGGATGG 
    AAAGGAAGTG TCTAATGAGG AAATTGTGAG GCCTAGAGTC CCACTGGAGG 
    CATGCTTAGC AAGTTTTTCA GGCGCGGAGG AAGTGCCTGA ATTTTACAGC 
    ACTGCATTGA ATTCAAAGAC AACAGCAATT AAGACTGCTG GCTTTAAAAC 
    ATTTCCTGAT TACCTGGTGT TGCAGATGCG CAAGTTTGTA ATGGAAGCAG 
    GATGGGTGCC AAAGAAACTA GATGTATACG TAGATGTGCC AGATATAATT 
    GATATCTCGC ACATGCGCAG CGAAGGCATA CAGCCTGGTG AAGAGCTACT 
    ACCTGAAGGA GCTTCTGGTG ATAACAAAGC TGAACCTGTT CATCCTGTTG 
    CCAGTGAGGA CATTGTATCT CAGCTGGCAA GCATGGGGTT CAATTATCTT 
    CATTGCCAGA AAGCTGCTAT TAGTACATCA AACACAGGAG TTGAGGAGGC 
    GATGAGTTGG CTTCTCTCAC ACATGGATGA TCCAGATATC AACGATCCAA 
    TATCTAAAGA TTCACAGGCT GCTGAACAAA CTGTTGATGA AACTAGCGTT 
    CAAACTCTTG TTTCCTTCGG ATTTCAAGAA GATGTTGCTC GAAAGGCCTT 
    GGCAGCTTCT GGTGGAAATA TCGAGAGAGC AACAGACTGG ATTTTTAGCC 
    ACCCTGAGGC TTTTAGCTCA GTACCTACTG ATTCTTCAAC AAGCAATATG 
    GAAGATGATG ATGCACACAT ACCAGATGGA AGTGGCAGAT ACAAATTGAT 
    GGCGTTTGTG AGCCATATGG GCACCTCTAC CCATTGTGGG CACTACGTTG 
    CCCATGTCCT CAAAGACGGG AGGTGGGTAA TATTCAATGA TAGTAAGGTT 
    GCTGCCTCTG TCGACTTGCC CAAGGATATG GGATACCTGT ATTTCTTTCA 
    AAGGATATAA AGCATTAGCA GCTGAAAGAC TTCACAGGCA AGAAATACAT 
    TCGCTCGCTG ACTTGAGTCT TAGTTATGGG CACCTATGAT CAAAAGCACG 
    GCGGATAGTC GGTGAACTTG CATGCAGATG GACTTAGAGC GAGTGTTGGT 
    CACATCCTGT CGTGCTGACT TTAGACTGAT CGATCAGCTG GGATATCACT 
    TTGTTCCATG GCATTATGCA TTGGCACATT CAATTCTTCT TTGTCGATCT 
    ATCATCTTAG CGTTAACATT CTGCCATGAA AACTTTGGAC TGGCTCAACT 
    TTTTACATAT GAAATGGAAA ACAAAAGGCA AGGGACGGTC CCTGATGCCG 
    CATATATATT TTGCACATTG TAGCAGAGCG CTGGGTGTTA AAAGATTGGT 
    CCTGGACACC

    Gene models with high sequence identity

    1. AT3G20630.1 [+] show detail - ubiquitin-specific protease 14
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.6e-23
    HMMPfam Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 4.1e-47
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 5.8e-05
    HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 1e-09
    HMMPfam Zinc finger, UBP-type 9.8e-17
    PatternScan Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site 0
    PatternScan Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site 0
    superfamily Cysteine proteinases 5.1e-81
    superfamily UBA-like 2.3e-10
    HMMSmart Zinc finger, UBP-type 2.1e-22
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 0.00024
    HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 2.9e-11
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 10.234
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 15.029
    ProfileScan Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 23.652
    ProfileScan Zinc finger, UBP-type 17.908
    HMMPIR Ubiquitinyl hydrolase 0
    HMMPanther UBIQUITIN SPECIFIC PROTEASE 5/UBP14(YEAST) 5.7e-234
    HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 5.7e-234

    See the detailed result >

    AT3G20630.1

    Model type
    Protein coding
    Short Description
    ubiquitin-specific protease 14
    Curator Summary
    Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Also involved in root responses to phosphate deficiency.
    Computational Description
    ubiquitin-specific protease 14 (UBP14); CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), UBA-like (InterPro:IPR009060), Ubiquitinyl hydrolase (InterPro:IPR016652); Has 2045 Blast hits to 1942 proteins in 227 species: Archae - 0; Bacteria - 2; Metazoa - 1042; Fungi - 463; Plants - 217; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR