K28906

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28906

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28906

Determination of introduced cDNA(s)

  • J013001N14 - Rice Full-length cDNAs - Original: J013001N14

    full reading [+] show sequence

    Nucleotide sequence: J013001N14 - full reading 
    GGCTTGACTA ATACTACTCA GGTTTGTCCT TTTCTACAAC AATCCTCCAT 
    TGGTGTGGCG GATCGATTGA TTCTTTCTTT CTGCTGCCTC CTACCAGCTG 
    GGACTGGATT ATGCTATCAA AGGGAAACTA CATCGGTGAA TTCTCAATAT 
    CCTGCCAAAC TGAGCAAATT TTCTGTGTAG TAGCATCATG CGGCAGTCTC 
    GACTCTTCTA TCTTTGCTCC ATTATCTTCA TGTTCTACTT GGTGCAAAGA 
    ACAGAAGCAC AGATCACTGC ACCTTGGGAA GTTGATGCTC TGAAAGCTAT 
    CAAAGGCAAT CTGATAGATC CGCAAGGACG TCTAAACAAC TGGAACCGTG 
    GAGATCCGTG CATGGGAAAT TGGTCTTATG TTCACTGTTA CAATGAAACA 
    GCAAGTGATG GATATCTCCA TGTATTAGAA TTGCAACTTC TAAAATTGAA 
    TTTATCTGGA TCTTTAGCTG CTGAGCTTGG TCGGCTATCT CACATGCAAA 
    TAATGGATTT TATGTGGAAT AACATCAGTG GCAGCATACC TAAGGAGGTT 
    GGCAACATCA CTTCTCTGAA ATTACTGCTC TTAAATGGAA ACCAGCTTAC 
    TGGTTCTCTA CCAGAGGAGA TTGGTTTCCT TCCTAATCTG GATAGGATTC 
    AGATCGACCA GAACTACATA TCTGGACCCA TACCTAAATC ATTTGCTAAT 
    CTGAACAAAA CAAAGCACTT TCATATGAAC AACAATTCAT TAAGTGGTCA 
    AATTCCACCT GAACTATCCA GATTACCTTC ACTTGTTCAC TTATTGTTGG 
    ATAACAATAA CTTGTCGGGC TATCTTCCTC CAGAGTTATC GAAGTTACCA 
    AAACTACTTA TCATCCAGCT TGACAACAAT AATTTCTCAG GAACCTCAAT 
    TCCTTCATCT TATGGCAATA TCACCACACT TCTGAAACTG AGTTTGAGGA 
    ACTGCAGCTT GGAAGGACCT GTTCCTGATG TCAGTGGAAT ACCCCAACTT 
    GGCTATCTGG ATCTTAGTTG GAATCAGTTA AGGGGTTCAA TACCATCTGG 
    CCGACCAGCA AGCAACATAA CCACAATAGA TCTTTCCCAC AATCTTCTAA 
    ATGGATCAAT TCCTGGAAGT TTCTCTGGCC TTCCCAATCT ACAAAGACTG 
    TCATTGGACA ATAACAATTT GGATGGTTCT GTTCCATCAG ATGTCTGGCG 
    GAATATTGAT TTCAGTGGAA ATAGAAGTCT TATATTGGAT TTCCAGAACA 
    ATTCTCTAAC CAATCTATCA AATCCTCTTT CACCACCTGC CAATGTTACC 
    ATCCTGTTAT CTGGAAACCC CATCTGCACA TCTCCAAATC AACTGAACAT 
    TACTCAGTAC TGTCAATCAG TGCCAGTTAT TGTGCCTGAC GGTTCTGCAA 
    GTAATGCCAC AGTTTGTCCG CCATGCTCTA CTGACCTTCC GTTTGAAAAC 
    ATACTGATGT CACCAATACG ATGTATATGT GCTATTCCAC TTTATGTTGA 
    TTACCGGCTA AAGAGTCCTG GATTTTGGGA TTTTGTTCCA TATGAAGGAC 
    AGTTTCAACA GTACTTGTCA TCTGGACTTT CATTGTCTTC TTACCAATTA 
    GAAGTTTCTC AATTTATGTG GGAAGAAGGC CCACGGGTGA AGATGAATCT 
    GAAACTGTTT CCAAATAACA CTGCTTATTT TAATAAGAGC GAGGTGTTAA 
    GACTGAGAGG AATGTTCACA GGCTGGTTGA TTCCAGACTC TGATATATTC 
    GGGCCCTATG AGCTCCTCAA CTTCAATCCA GGGTGGTATA ACAATTTATT 
    TCCAGATCGT GCAAAGTCCA GCCTAAGTAC AGGTGCCATT GTTGGTATTG 
    TCGTGGCAGC GTTTGCTGCA GCAGCATTTC TTTCATCCCT CATTACTCTC 
    ATTATACTGA GAAGACGTTC AAGATATTCT TCAAAAAGAC GCTCTGCAAA 
    AAGAATTCCA ATGAAGATTG ATGGTGTAAA AGACTTCAGT TTTCAAGAAC 
    TGTCACATGG TACAAACGAC TTTAGTGACT CAGCACTAAT TGGTCAAGGA 
    GGGTATGGGA AAGTGTACAG AGGTATTCTC TCTGATGGAA CAATAGTAGC 
    AATAAAACGT GCGCAGCAGG GATCTCTTCA GGGTTCGAAG GAGTTCTTCA 
    CAGAGATAGA ATTGCTGTCC AGGCTGCATC ACCGGAACCT TGTTTCATTG 
    CTTGGTTATT GTGATGAAGA AGATGAGCAG ATGCTGGTAT ATGAGTTTAT 
    GCCTAATGGT ACTCTACGTG ATCATCTTTC AGCTCGATCA AAAGAGCCCC 
    TAAATTTTCC CACGAGGTTA CGAATTGCGC TGGGGTCGTC GCGAGGCATC 
    CTCTATTTAC ACACAGAAGC AGACCCTCCA ATATTTCACC GTGACATCAA 
    AGCAAGCAAT ATTTTACTGG ACTCAAAGTT TGTCGCAAAA GTTGCTGATT 
    TTGGTCTCTC TCGGCTTGCC CCAGAGCCAG AATCAGAGGG GATTGCTCCT 
    GGTCATGTGT CAACTGTTAT AAAGGGTACC CCGGGTTATC TTGATCCGGA 
    GTATTTCCTT ACTCATAAGC TGACAGACAA AAGTGACGTG TACAGCCTTG 
    GTGTTGTTTT TCTGGAACTG CTGACAGGGA TGCAACCTAT TTCTCATGGA 
    AGAAATATAG TTAGAGAGGT TGTTGCGGCC AATCAGAGTG GGATGATATT 
    GTCAGTGGTT GACAGCCGGA TGGGATCGTA CCCAGCAGAA TGCGTGGAGA 
    AGTTTGCTGC ACTGGCACTG AGATGCTGCC GAGACGAGAC GGACGCAAGG 
    CCGTCCATAG TGGAGGTGAT GAGGGAGCTG GAGAAGATAT GGCAAATGAC 
    ACCGGACACC GGGAGCATGT CCTCACTATC CTTGGAACCT AGCAACACAG 
    CCACCCCATC GTCGGGATCC AGGATGATGG TTTCATCGTC ATCTGGGGTT 
    GGAAATGATG ATCACCATCA CTACAACATG TCATCATCCG ATGTCTCCGG 
    CAGTAACCTC CTCAGCGGTG TTGTACCTAG CATCAATCCT CGCTGAACAT 
    TATTTGTTAT ATACTCCATA GTGTAAGACA CGCATGTATT TAAAGATTTA 
    ACTTTAAAAA CATCTGACTA ACAAGTAGTG TAATGTAAAT CGAATTTTAT 
    TTGCTGAAAA TAATATCATT GGATTGGTAT TTC

    Gene models with high sequence identity

    1. AT1G06840.1 [+] show detail - Leucine-rich repeat protein kinase family protein
      E-value: 0; Score: 946.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 4.8e-81
    superfamily L domain-like 2.8e-52
    superfamily L domain-like 2e-19
    HMMPfam Serine-threonine/tyrosine-protein kinase 1.2e-45
    HMMPfam Leucine-rich repeat 0.61
    HMMPfam Leucine-rich repeat 0.42
    HMMPfam Leucine-rich repeat 0.51
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 3.6e-06
    Gene3D no description 4.9e-49
    Gene3D no description 6.7e-13
    Gene3D no description 7.4e-24
    Gene3D no description 5.3e-49
    HMMPanther RECEPTOR PROTEIN KINASE-RELATED 2.7e-204
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.7e-204
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Leucine-rich repeat, typical subtype 100
    HMMSmart Leucine-rich repeat, typical subtype 24
    HMMSmart Leucine-rich repeat, typical subtype 330
    HMMSmart Leucine-rich repeat, typical subtype 0.47
    HMMSmart Serine/threonine-protein kinase domain 2.9e-41
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.8e-32
    ProfileScan Protein kinase, catalytic domain 38.958

    See the detailed result >

    AT1G06840.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat protein kinase family protein
    Computational Description
    Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G01950.1); Has 194453 Blast hits to 138780 proteins in 4845 species: Archae - 155; Bacteria - 17954; Metazoa - 60073; Fungi - 10970; Plants - 82493; Viruses - 385; Other Eukaryotes - 22423 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR