K28909

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28909

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28909

Determination of introduced cDNA(s)

  • J033131G20 - Rice Full-length cDNAs - Original: J033131G20

    full reading [+] show sequence

    Nucleotide sequence: J033131G20 - full reading 
    GTGAAAAGGG AAATGATATC CATTTCCCAC CCTCCTAATC CCATTAGCCA 
    TACGCAGCCC GAGTGTCTTC CCCTTCCCTT TGTGGCGTAA AAGAAAGAAA 
    ATCTCCCGTC TCCTCCGCTC CTTGCGCCGC CAAGACGAGT CGCGGCTGAA 
    CAGGGGAGGG GCGGCGATCT CCATCTGGCG AGCAGAGCAG GCGAGAGGAT 
    TGTGTTCTCG TTTCTCCTAC CCTACAGGAT GTTTAGATAA TTCGAGACCC 
    TAGCTTTGAA CTTTGAGTAG GTTCAGTTCT TAGCTGTAGA AGATGAATGG 
    TTCAAGTGGC TCCCAAGGAC ATAATGTCAA TGGAGGACAG AAGAAAGTGC 
    AGCATGCTAG CCCACTCACT CTGAACAATG GGTCAAAGCA CCGTCCATTG 
    ACTCCCATGA GACGATGCCG CGGTGTAGCA TGTGTGGTGA TCATACTGTC 
    AACAGCATTC ACATTGATAG TTTTCATAGC CCCTATTACT ACTTTCCTTG 
    TTCGGCTAGT CAGCGTGCAT TACAGTAGAA AGGCGACCTC TGTTCTGTTT 
    GGAATGTGGC TATCTTTATG GCCATTCTTG TTTGAGAAGA TCAACAAGAC 
    CAATGTGGTT TTCTCTGGTG AAAGTGTACT TCCAAAAAAG CGTGTCTTGT 
    TATTTGCCAA CCACAGGACT GAGGTTGACT GGATGTATTT GTGGGATCTT 
    GCATTGAGGA AAGGCTATTT AGGATATATC AAGTACATCC TTAAGAGCAG 
    CTTGATGAAA TTGCCTGTTT TTAGCTGGGC ATTTCACATT TTTGAGTTTA 
    TCCCAGTAGA ACGGAAATGG GAGATTGATG AAGCAATTAT CCAGAACAAA 
    CTGTCAGCAT TTAAGGACCC CAGAGACCCC CTCTGGTTGG CCGTTTTCCC 
    TGAGGGCACT GATTATACTG AGAAGAAATG CATCAAGAGT CAAGAATATG 
    CTTCGGAGCA TGGTCTGCCT ATACTTAAAA ATGTTCTTCT TCCAAAGACA 
    AAGGGGTTCC TTTGCTGTTT GCAAGAGTTG AAGAGCTCCC TAGATGCAGT 
    TTATGATGTC ACAATAGCGT ATAAGCATCG CCTGCCAGAT TTTCTGGATA 
    TTATATATGG CACCGATCCT TCTGAAGTCC ACATCCACAT CAGAACTGTT 
    AAGCTCTGTG ACATTCCAAC GTCAGAAGAT GAAGTAACCG ATTGGATGAT 
    AGAGAGGTTC AGGCAGAAGG ACCAGCTTCT GTCAGATTTT TTCATGCAAG 
    GCCACTTCCC TGATGAAGGA ACTGAAGGGG ATGTATCCAC ACCGGAGTGC 
    CTTGCTAATT TCATTGCAAT AGTCAGCTCG ACAGGCTTCT TCTTGTACCT 
    ATCTCTTTTT TCGTCTGTGT GGTTCAAGGT CTATGTATTA TTAAGCTGCG 
    CTTACCTTAC ATTTGTTACC TATTTCTCCA TTCAACCACC CCAACTGATA 
    TGCTCATCAG AGGGTGGAAC CCATGCCAAA AAGGTACTGT AGAAAGAGGC 
    TGTAGCTTTG ACTGGAAACT GTATATCTGC AAAAGATATT TACTGTAGAA 
    ACCCTTGGCT TGTGCAATTG TCATCGTTC

    Gene models with high sequence identity

    1. AT3G18850.4 [+] show detail - lysophosphatidyl acyltransferase 5
      E-value: 3e-127; Score: 452.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycerol-3-phosphate (1)-acyltransferase 1.6e-13
    HMMSmart Phospholipid/glycerol acyltransferase 1.4e-19
    HMMPfam Phospholipid/glycerol acyltransferase 4.8e-23
    HMMPanther 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4.2e-104
    HMMPanther 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4.2e-104

    See the detailed result >

    AT3G18850.4

    Model type
    Protein coding
    Short Description
    lysophosphatidyl acyltransferase 5
    Computational Description
    lysophosphatidyl acyltransferase 5 (LPAT5); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: lysophosphatidyl acyltransferase 4 (TAIR:AT1G75020.2); Has 1767 Blast hits to 1762 proteins in 514 species: Archae - 0; Bacteria - 643; Metazoa - 539; Fungi - 190; Plants - 155; Viruses - 6; Other Eukaryotes - 234 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR