K29042

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29042

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29042

Determination of introduced cDNA(s)

  • J033025K01 - Rice Full-length cDNAs - Original: J033025K01

    full reading [+] show sequence

    Nucleotide sequence: J033025K01 - full reading 
    GTTTCTCGTC GTGTTCTTGA AACTTTGACA TACTTGGCAA GAAATCATCC 
    AAATGTGGCT AAACTCTTGC TATTTCTTGA GTTCCCTTGC CCCCCAACTT 
    GCCATGCTGA AACATCTGAT CAGAGGCGTG GCAAGGCTGT TCTTATGGAA 
    GGTGACAGTG AACAGAACGC TTATGCACTT GTCCTACTTT TAACCTTGTT 
    GAATCAGCCA CTTTATATGA GGAGCGTAGC TCATCTTGAA CAGCTACTAA 
    ACCTTCTCGA AGTTGTTATG CTCAATGCCG AGAATGAAAT TACACAAGCT 
    AAGCTGGAAG CAGCATCTGA AAAACCATCT GGACCTGAGA ATGCAACGCA 
    AGATGCCCAA GAGGGTGCGA ATGCTGCTGG ATCATCTGGA TCGAAGTCCA 
    ATGCTGAGGA TAGCAGCAAA CTCCCTCCTG TTGATGGTGA AAGTAGCCTG 
    CAAAAAGTTC TGCAGAGTCT TCCCCAAGCA GAGCTTCGAC TGCTATGTTC 
    ACTGCTTGCA CATGATGGGT TGTCAGACAA TGCGTATCTC CTGGTAGCAG 
    AAGTTCTGAA AAAGATTGTA GCTCTTGCTC CTTTTTTTTC TGTTGCCATT 
    TCATAAATGA ACTTGCACAT TCAATGCAAA ATTTGACGCT TTGTGCAATG 
    AAGGAGCTTC ACTTGTATGA GGATTCTGAA AAGGCTCTTC TTAGCACATC 
    ATCAGCCAAT GGCACTGCAA TTCTTAGAGT TGTGCAGGCT TTGAGTTCTC 
    TTGTCACCAC TCTGCAAGAG AAAAAGGATC CAGATCATCC TGCTGAAAAA 
    GATCATTCTG ATGCATTGTC CCAGATTTCT GAAATTAACA CTGCATTGGA 
    TGCATTATGG TTGGAGCTGA GTAATTGCAT AAGCAAAATA GAGAGCTCTT 
    CAGAATACGC ATCGAATCTA AGTCCTGCTT CTGCAAATGC AGCCACATTA 
    ACAACAGGTG TAGCACCTCC ATTGCCTGCC GGAACTCAGA ACATATTACC 
    GTACATAGAA TCATTTTTCG TGACATGTGA GAAGTTACGC CCTGGGCAAC 
    CTGATGCTAT TCAAGAAGCT TCAACATCTG ACGTGGAGGA TGCATCAACT 
    TCTAGTGGTG GGCAGAAATC ATCTGGAAGC CATGCAAATC TTGATGAGAA 
    GCACAATGCG TTTGTTAAAT TCTCAGAGAA ACACAGAAGA TTGTTGAACG 
    CATTTATCCG CCAAAACCCT GGGCTATTGG AGAAGTCATT CTCTCTGATG 
    TTGAAAATCC CTCGCTTGAT TGAATTTGAC AACAAGCGTG CATATTTCCG 
    GTCTAAAATT AAGCATCAGC ATGATCATCA TCATAGCCCT GTTAGAATTT 
    CTGTGCGCCG GGCATATATT TTGGAGGATT CATATAACCA GCTTAGGATG 
    CGTTCACCAC AGGATTTGAA GGGTAGACTG ACTGTTCATT TCCAAGGTGA 
    AGAAGGCATT GATGCTGGTG GACTAACAAG GGAATGGTAT CAGCTGCTAT 
    CACGAGTGAT TTTTGATAAG GGTGCCCTTC TATTCACAAC TGTTGGAAAT 
    GACTTGACAT TTCAACCAAA CCCTAACTCG GTGTATCAGA CTGAACACCT 
    CTCATATTTC AAATTTGTTG GGCGAGTGGT TGGTAAAGCT CTATTTGATG 
    GCCAACTTTT GGATGTCCAT TTTACAAGAT CTTTCTACAA GCACATACTA 
    GGTGTCAAGG TTACATACCA TGACATTGAA GCTATTGATC CTGCATACTA 
    TAAAAATTTG AAATGGATGC TTGAGAATGA CATAAGCGAT GTTCTGGACC 
    TCTCCTTCAG CATGGATGCA GATGAAGAGA AGCGGATATT GTATGAGAAG 
    GCAGAGGTGA CTGATTATGA GTTGATTCCT GGAGGCCGAA ACATCAAGGT 
    CACCGAGGAG AACAAGCATG AATATGTGAA CCGGGTTGCA GAACATCGTT 
    TAACCACTGC TATTAGGCCT CAAATCACCT CTTTTATGGA GGGATTTAAT 
    GAGCTCATTC CTGAGGAGCT GATATCAATC TTTAATGACA AAGAACTTGA 
    ACTGCTAATC AGTGGACTCC CAGACATTGA CTTGGACGAT CTAAAAGCAA 
    ATACAGAATA TTCTGGGTAC AGCATAGCTT CTCCAGTCAT TCAGTGGTTC 
    TGGGAGATTG TCCAAGGGTT CAGCAAGGAG GACAAAGCCC GGTTCCTTCA 
    GTTTGTTACT GGCACCTCAA AGGTACCTCT GGAAGGTTTC AGTGCACTCC 
    AAGGAATATC TGGACCACAA CGATTCCAGA TACACAAGGC CTACGGAAGC 
    ACCAACCATC TGCCTTCAGC ACATACTTGC TTTAACCAAC TAGACCTTCC 
    TGAGTACACA TCGAAAGAGC AGCTCCAGGA GAGATTGCTA CTGGCTATTC 
    ATGAGGCGAA TGAAGGTTTC GGATTTGGTT AATCAGTCAC TCCTGCACCT 
    GTGTGCAAGA AATTTCAGGG AGTAATGTAC AGATACCGTC GGAGTTGCAA 
    TAGGCGAGGG GAATGTGCGC GGACTCTTAC ATAACCTGCT ACTAGATTCA 
    TTTGTTGCCT GCATCAACCA TCGGCGTTGG TCCCTGAAGA CTGATGAGAT 
    TTGTTGACAA AGTACCGGCC TGCCCACGAT GCTTTATAGG ACTGGTTGCT 
    GCGAAGGATG TGCAGGGAGG TGTAGCAGGA AGTGCTAGAA GACAGCAACT 
    ATTTGGTGTT CATAATATTT TTTTTCTTTC CCTTTTGGGT CTTTTTTGGC 
    CATTGCCCCG TTAATAGATT TCACCTTCTC TATACATTGG ACCTGTATGG 
    ATTTTTTTTC CTTTTTTATT CAAGTTTGTT TTTGGGGGGC ATAGACCGGT 
    GGAATGCAAC ATTAAGTAGA ATGCAAGTTT TCCATCGCTA TTGCATATTC 
    AATGC

    Gene models with high sequence identity

    1. AT1G70320.1 [+] show detail - ubiquitin-protein ligase 2
      E-value: 0; Score: 74.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther E3 UBIQUITIN PROTEIN LIGASE URE-B1 6.8e-216
    HMMPanther HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 6.8e-216
    superfamily HECT 2.8e-131
    HMMPfam HECT 2.1e-98
    Coil coiled-coil 0
    HMMSmart HECT 7.7e-166
    ProfileScan HECT 110.495

    See the detailed result >

    AT1G70320.1

    Model type
    Protein coding
    Short Description
    ubiquitin-protein ligase 2
    Curator Summary
    encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.
    Computational Description
    ubiquitin-protein ligase 2 (UPL2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosol, mitochondrion, ubiquitin ligase complex, nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, domain of unknown function DUF913 (InterPro:IPR010314), HECT (InterPro:IPR000569), Armadillo-type fold (InterPro:IPR016024), Ubiquitin interacting motif (InterPro:IPR003903), E3 ubiquitin ligase, domain of unknown function DUF908 (InterPro:IPR010309), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 1 (TAIR:AT1G55860.2); Has 34660 Blast hits to 19733 proteins in 1213 species: Archae - 286; Bacteria - 8191; Metazoa - 9374; Fungi - 5439; Plants - 1788; Viruses - 520; Other Eukaryotes - 9062 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR