K29203

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29203

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29203

Determination of introduced cDNA(s)

  • J033037G04 - Rice Full-length cDNAs - Original: J033037G04

    full reading [+] show sequence

    Nucleotide sequence: J033037G04 - full reading 
    GCTTCCCCCC CGGCTGCGTC TCCTCCTCCT CCGCCGCCGC CGCCGCCGCC 
    TCCTTCTCCG ACGATGCCTT CCCTCCCCGT CGCCGCCGCC GAGCCGATGG 
    CCGTCGACGA GTCGGCCTCC AAGAAGTCGA AGCGCAAGCT GAAGGCGGCG 
    GAGGTGGAGG TGGAGGCCTC GTCGAGGAAG AAGGAGAAGA AGGAGAAGAA 
    GCGGAAGGCG AAGGAGCCGT CGCCATCGTC CTCCTCCTCA TCCGAGGAGG 
    AGGAGAGGAG CAGCACGAGC TCCGACGAGC CGGCGCCCGC CGCGAAGAAG 
    GCGAAGAAGG AGAAGACGAA GGAGAAGGTG GTGGTGGAGG AGGAGGAGGA 
    GGACGACGAC GAAGGGGAGC TCACCGCCAG CGGCGACGAG GATCCCGCCG 
    ACCCCAACGC GCTCGCCAAC TTCAGGATCT CGGAGTCGCT CAGGGAGAAG 
    CTCAAGTCCA AGGGGATCAA GGCGCTGTTC CCCATCCAGG CCACCACCTT 
    CGATCTCGTC CTCGACGGCC ACGACCTGGT CGGCCGCGCG CGCACTGGAC 
    AGGGAAAAAC ATTGGCTTTT GTTCTACCGA TACTTGAGTC ATTAGTTAAT 
    GGGACACACA AGGCATCCAG AAGGACTGAT TATGGCAGGC CTCCAACTGT 
    TTTGGTTCTG TTGCCTACCA GAGAGCTAGC CAAGCAGGTG CACACAGACT 
    TTGCATTTTA TGGTGCAACA TTTGGGCTAT CTGCATGCTG CGTATATGGG 
    GGTTCTGATT ATCGTTCTCA AGAAATGGCA ATCAGAAAGG GGGTTGACAG 
    TGTTGTTGGA ACTCCTGGTC GTGTGAAGGA CTTTGTTGAA AAGGGAACCC 
    TCAATTTTAG GTCTTTGAAA TTCCGTGTCC TTGATGAGGC TGATGAGATG 
    CTTAATATGG GCTTCGTTGA TGATGTTGAG CTTATTCTTG GCAAAGTTGA 
    AGATGTTACA AAAGTACAGA CACTTCTCTT CAGCGCTACT ATACCAGAGT 
    GGGTGAAGAA GCTCTCCTTG AGATTTCTCA AATCTGGAAA GAAAACGGTT 
    GATCTTGTTG GAGATGAGAA ATTGAAAGCT AGTGCATCTG TTAGGCATCT 
    TGCTCTTCCT TGTAACCGTG CTGCAAGGGC TCAAGTTATT CCAGACATCA 
    TCCGATGCTA TAGCCGTGGA GGCCGGACCA TTATCTTTAC CGAGACAAAA 
    GAATCTGCAT CAGACCTCTC TGGTTTGATT GCTGGATCAC GTGCCTTGCA 
    TGGTGATGTT GCTCAAGCTC AGCGTGAAGT TATTCTTGCT GGGTTCAGGA 
    GTGGCAAGTT TTTAGTTTTG GTTGCTACAA ACGTGGCTGC ACGAGGGCTG 
    GACATTAATG ATGTGCAGCT TATCATTCAG TGTGAACCTC CACGTGATGT 
    TGAAGCCTAC ATACACCGGT CAGGTCGGAC TGGGAGAGCA GGCAATACTG 
    GTGTTGCTGT CATGCTTTTT GAACCCAGAT ATAAGTTCAA TGTGAACAGA 
    ATAGAAAGGG AGTCTGGGGT CAAATTTGAA CATATCTCTG CACCACAGCC 
    AACTGATGTG GCACAATCTG CTGGTACTGA AGCAGCAGAA GCCATTTCCA 
    GTGTTTCAGA CAGTGTCATT CCTGTTTTTC GGGAGCAAGC TGAGCAACTA 
    TTGAACTCTT CCGGGATGTC TGCAGTTGAT CTACTAGCCA AAGCACTTGC 
    GAAGGCAGTT GGCTACACGG ACATAAAGAA GAGATCCTTG CTGTCTTCTA 
    TGGACAACCA CACTACATTA CTTCTTCAAA CTGGTCGATC GGTGTATGCA 
    GCAGGATTTG TTCTTTCTAC TTTGAAAAGG TTTATGCCAG AAGAGAGACT 
    TGCAGATGTA AAGGGTATAA CCATCACTGC TGATGGGACA GGTGCTGTAT 
    TTGATGTTCC TTCAGCAGAG GTTGAAGACT ATATTCAAGG TGCACAGAAC 
    GCTGCCATGG TGACTGTCGA GGAAGTGAAA CAATTGCCAC CCTTGCAAGA 
    GAGGGAACAG TCTGGTGGCA GCCGAGGTGG AGGAAGGTTT GGAAACAGGA 
    GATTTTCTGG TGGTGGTGGT GGCCGGGGTG GAGGCGGCAG AGGGTTCGGT 
    GGAGGCAGAG GCAGGGGAGG TGGCGGCGGC AACAGGTTTA ACAAGAGGTA 
    CTAGCTGTTG CTGGAGCACT CTCATTTTTG ACCTATAGGT TGAGCCAAGG 
    CACAGGGAAT CGCCAAAATT TTGACTGCGC CATGTATCGG TTTTTTGTTT 
    ATTTGTTAGT GTTTGTGTGT TCGAGATTAT GATGATCAAT TTTGCCATCG 
    CAATAGTGTA CAATATTGAT CTGATACTTG CTACATAGTA ACTGTTAAGA 
    ATGAAGCTAT ATACTTGTTT CCCCATCGGC TATTACCGAA GCTTTTGAAT 
    GAATGCAAAA TATGTCGTCT GTG

    Gene models with high sequence identity

    1. AT5G62190.1 [+] show detail - DEAD box RNA helicase (PRH75)
      E-value: 0; Score: 696.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-56
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-38
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    HMMSmart DEAD-like helicase, N-terminal 1.3e-45
    HMMSmart DNA/RNA helicase, C-terminal 2.1e-25
    HMMPanther DEAD-BOX PROTEIN 21, 50 1.3e-251
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 1.3e-251
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D no description 5.1e-56
    Gene3D no description 6.1e-35
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 27.636
    ProfileScan DNA/RNA helicase, C-terminal 20.025
    ProfileScan RNA helicase, DEAD-box type, Q motif 7.467
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 8e-44
    HMMPfam GUCT 4.6e-30
    HMMPfam DNA/RNA helicase, C-terminal 9e-23

    See the detailed result >

    AT5G62190.1

    Model type
    Protein coding
    Short Description
    DEAD box RNA helicase (PRH75)
    Curator Summary
    DEAD/DEAH box RNA helicase PRH75
    Computational Description
    PRH75; FUNCTIONS IN: DEAD/H-box RNA helicase binding, ATP-dependent helicase activity; INVOLVED IN: RNA metabolic process; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), GUCT (InterPro:IPR012562), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH3) (TAIR:AT5G26742.2); Has 57587 Blast hits to 49572 proteins in 3210 species: Archae - 795; Bacteria - 24538; Metazoa - 10953; Fungi - 6002; Plants - 4052; Viruses - 90; Other Eukaryotes - 11157 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR