K29224

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29224

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29224

Determination of introduced cDNA(s)

  • J013045H01 - Rice Full-length cDNAs - Original: J013045H01

    full reading [+] show sequence

    Nucleotide sequence: J013045H01 - full reading 
    GCTCTCCTCC CGTGCTTCTC TCTCTTATTC CTCTCTCTCT CTCTCTCTTG 
    AGGGCTCGCG CAGAGCGAAG GCGAGAGGAG GAGGAAGAGG AGGAGAGGGA 
    GCCCTAGCCC TGCCCCCAGC CGGCGCAGGC GGTCGCTAGG GTTAGGGTCT 
    CCCCCCGCCC GCGCCTTCCT TCCTTCCGGC CTTTTCCCGT CCCCTCACCT 
    GCGGCGTGTG CGCTTTTCTC GGCCTCGCGG CGGCGCGGCG CGGCGCGAGC 
    CAATGCCGTG TGTCTGAGTC TGACCCGTTG ATTCTTGGCG GATTGATCTG 
    GAGGTGGGCT TGTTGGGGTT GCTGTGGTAG CCGGGAGGGA GGGGAAGCGG 
    CGGCGTTTGT TTCTGAGGAT ATTTTTGGTG CGAGATCCGG CGGGGCGGCG 
    AGATGCAGCA GGATCAGCGC AAGAAGAGTT CTACAGAGGC GGATTTTTTC 
    ACGGAGTATG GCGATGCAAG TCGATACAAG ATTCAGGAAG TTATTGGTAA 
    GGGAAGCTAT GGGGTGGTGT GCTCAGCGAT AGATGTCCAC ACTGGAGAGA 
    AAGTGGCAAT CAAGAAGATA CACGATATCT TTGAACACAT ATCTGATGCT 
    GCACGGATTC TCCGTGAGAT CAAGCTTCTG AGGCTGCTAA GACATCCTGA 
    CATAGTTGAG ATCAAGCACA TTATGTTGCC TCCATCGAGG AGGGATTTCA 
    AAGATATTTA CGTAGTTTTT GAGCTTATGG AGTCTGATCT TCACCAAGTT 
    ATAAAGGCTA ATGATGACTT GACGAAGGAG CATTATCAGT TCTTTCTTTA 
    CCAACTACTC CGGGCTCTGA AATACATTCA CACTGCTAAT GTTTATCACC 
    GGGACCTGAG GCCGAAGAAT ATATTAGCTA ATTCCAACTG CAAACTGAAA 
    ATTTGTGATT TTGGACTGGC GCGAGTTGCA TTCAATGATA CTCCGACAAC 
    AATCTTTTGG ACGGATTATG TTGCAACAAG ATGGTACAGG GCTCCAGAGC 
    TCTGTGGATC CTTCTTTTCA AAGTATACAC CAGCCATTGA CATTTGGAGC 
    ATTGGATGCA TCTTTGCTGA GGTGCTGACA GGAAAGCCTT TATTTCCTGG 
    TAAAAATGTT GTCCATCAAT TAGATTTGAT GACTGATCTT CTGGGCACGC 
    CATCCATGGA TACAATTTCT CGGGTCCGGA ATGACAAAGC AAGGAGGTAT 
    CTGAGTAGCA TGAGAAAGAA GGAGCCAATC CTATTTTCGC AGAAGTTTCC 
    TAGTGCAGAT CCTTTGGCGT TGGATCTTCT ACAAAAACTA TTAGCATTCG 
    ATCCAAAGGA CCGTCCAACT GCCGAAGAGG CATTGGCTCA TCCATACTTC 
    AAAGGGCTCG CAAAAGTTGA GAGAGAACCA TCCTGTCAAC CTATCACAAA 
    AATGGAGTTT GAGTTTGAGC GTAGAAGAGT GACAAAGGAA GATATAAGAG 
    AGTTGATATT CCGTGAAATA CTGGAATACC ATCCACAATT GCTCAAAGAC 
    TATATCAATG GCACCGAGAG AACAACCTTT CTATACCCAA GTGCTGTTGA 
    TCAATTTAGA AAGCAATTTG CCCATCTTGA AGAAAATGGT GGAAATGGCC 
    CGGTAATTCC AATGGATAGA AAGCACACTT CTCTTCCCAG GTCTACTATT 
    GTTCACTCAA CTCCAATTCC TGCCAAGGAA CAGCCCCGCA TTGGCCCATC 
    AAGGGATAAA CCATCTGATG AACCCTATAG CAATCCCCGG GAATTTGACA 
    GATTTTCTGG CAATGCCCCG AGGACCTCAC AAGCTCCACA AAGAGTGCCA 
    ACAGCAAGAC CAGGAAGAGT TGTTGGTCCA GTATTGCCTT ATGAAAATGG 
    TGCCACAAAG GATTCCTATG ACGCACGGAG ATTGGCAATG AACTCAGGGT 
    ATCCTCCCCA GCAACAAATC CCTCAAGCTT ATGGTTATTA TCAGATACCC 
    GGTAAGTCAG CTTGTTCTGA GCTGTCGCAG GCCGAAAGGT ATACGCTGCA 
    CCAGCAGGCC TACACTTGCG CAAACAGTGC CACTGTGACT GATGTTGCTC 
    TGGACATGAG AGCACCCCCG TTCCATCTAT CAGGAGGGCC GAAAAGCGAT 
    TCGTCCGAAA GGTTAGCAGC AGAGACAAAC CTATACACGA GATCTCTCAA 
    TGGCCTCGCT GCTACTGCTG CGGGAGTGGC AGCAAGTGCG CACAGAAAGG 
    TCGGTGTTGT TCCCTACGGC ATGTCGAGGA TGTATTAGTG CCCAACCATG 
    GCACATCCTG CATGCCCAAT GGGAGCTCTG ATGCTAGCTT GCGGCGAAGC 
    ATTGGGAACA AAGTGGCAGT TCAAGCTAGT TTGGGCACCA AGAGCACAGG 
    GCAATCCAAG GTTGACGACG ATGCCTAAGA AGTTGCATTG GTGCCCTGCT 
    GCTCCTGTTC CTGCTTGATC AGGAACCACC ACCGGAGGTG TCAAAAGCTT 
    TTCAACTCTC TATTCGCTTT AGGCAAATCA GCTTGTATCT GCCTGTGTGT 
    GTGTAAGAAA ATGTGCCCTT CGTTGCACAC TTGAAGGGGG TAGTCCAGTG 
    GCTTGTAATC TGAGCATATT TTAGGCGCCA ATTGTATTTC TAGGGTGAGG 
    GGACAAAAGG GAAAGGAAGG ACCACTAACC TTTTCCTCTT TTTTTTTTCT 
    TTTTCCAATG TTGTATAGAG ATGTTTCTCA TATCAAAAGT GCTACATCAG 
    AATGACTTGA GAAAGATATA AAGCAGACAA TTGCGCGGTT TACCGTAGCT 
    TC

    Gene models with high sequence identity

    1. AT2G42880.1 [+] show detail - MAP kinase 20
      E-value: 0; Score: 758.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Protein kinase, ATP binding site 0
    HMMSmart Serine/threonine-protein kinase domain 6.9e-96
    HMMSmart Tyrosine-protein kinase, catalytic domain 9.5e-15
    HMMPfam Serine/threonine-protein kinase-like domain 3.7e-68
    Gene3D no description 4.7e-07
    Gene3D no description 7.1e-67
    ProfileScan Protein kinase, catalytic domain 46.562
    HMMPanther MITOGEN-ACTIVATED PROTEIN KINASE 7 (ERK5)-REL 8.2e-181
    HMMPanther CDC2, MAP KINASE-RELATED 8.2e-181
    superfamily Protein kinase-like domain 1.3e-89

    See the detailed result >

    AT2G42880.1

    Model type
    Protein coding
    Short Description
    MAP kinase 20
    Curator Summary
    member of MAP Kinase
    Computational Description
    MAP kinase 20 (MPK20); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 19 (TAIR:AT3G14720.1); Has 119531 Blast hits to 118315 proteins in 3667 species: Archae - 102; Bacteria - 13281; Metazoa - 43923; Fungi - 12334; Plants - 29390; Viruses - 579; Other Eukaryotes - 19922 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR