K29242

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29242

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29242

Determination of introduced cDNA(s)

  • J023090E20 - Rice Full-length cDNAs - Original: J023090E20

    full reading [+] show sequence

    Nucleotide sequence: J023090E20 - full reading 
    GGGCTCCTCC TCCTCCTCTC ATCCTCTCCT CTCCCACTCC ACACCCAGGC 
    ACCCAGCTCG AGCGCGACTC GGCAAATCCA TGGCTCCCAC GGCGGCGTCG 
    GCGGCGGCGG GGGAGGAGCA GCAGGCGGTG GGGCTGGCGG CGCGCGACTC 
    CTCCGGCCAC CTCTCCCCTT TCGCCATCTC CCGGAGGAGC ACTGGAGATG 
    ACGATGTGGC GATAAAGATT CTGTTCTGTG GAATCTGCCA CTCTGACCTG 
    CACTGCATCA AGAATGAGTG GAAGCACTCC ATCTACCCAC TTGTTCCTGG 
    GCACGAGATC GCCGGTGTGG TGACGGAGGT GGGGAAGAAC GTCACCAGGT 
    TCAAGGCCGG CGACAGGGTC GGCGTGGGGT GCATGGTGAA CTCGTGCCGG 
    TCATGCGAGA GCTGTAACAA TGGCTTCGAG AACCACTGCC CGGAGGGCGT 
    CTTCACCTAC AACTCCGTCG ACAAGGACGG CACCGTCACC TACGGCGGTT 
    ACTCGAGCAT GGTGGTGGTG CACGAGCGCT TCGTGGTCAT GTTCCCGGAG 
    GCGATGCCGC TCGACGTCGG CGCCCCGCTG CTGTGCGCCG GCATCACCGT 
    GTACACCCCC ATGAAGTACC ACGGCCTGAA CGCGCCGGGG AAGCACGTCG 
    GCGTGCTCGG CCTGGGCGGG CTCGGCCACG TCGCGGTGAA GTTCGCCAGG 
    GCGTTCGGGT TGAAGGTGAC GGTGATCAGC TCGTCGCCGG GGAAGAAGCG 
    GGAGGCGCTG GAGCGGCTCG GCGCCGACGC GTTCGTCGTG AGCAGCAGCG 
    CCGAGGAGAT GGAGGCCGCG AGGTCCACCA TGGACGGCGT CATCAACACG 
    GTCTCCGCCA ACACCCCCAT GGCGCCGTAC CTGGCGTTGC TGAAGCCCAA 
    CGGGAAGATG ATCCTCGTCG GCCTCCCGGA GAATCCCCTG GAGGTCCCTC 
    CCTTCTCTCT CGTCCACGGG AACAGGACTC TGGCAGGGAG CAACATCGGC 
    GGCATGGCGG ACACGCAGGA GATGATCGAG CTGGCGGCGA AGCACGGCGT 
    GACGGCGGAC ATCGAGGTGA TCGGCGCCGA CGACGTGAAC ACGGCCATGG 
    AGCGCCTCGC CAAGGCGGAT GTCAGGTATC GCTTCGTCAT CGACGTCGGG 
    AACACCCTCC ACGCCGCCGC CGCCGAGTGA TGGCATCGCC TGCAAACTAT 
    TCGTGTGGTC TGTAATCTGT ATGAAATTGT TCATGGTACG TACACGATAT 
    ATAGATTGTG GCGTGTCATG GCGTATAGGA ATGAACCCGA TCGAGGAAGC 
    TATTGTTGGT AGTCTGATGC TAGTCAGCTC AGTGTTTGAC TGTTTGCATT 
    TACGGATTGA AATTGAGCTT TGTGTGGCCT AAGTTTTATT TTCC

    Gene models with high sequence identity

    1. AT4G37970.1 [+] show detail - cinnamyl alcohol dehydrogenase 6
      E-value: 4e-116; Score: 415.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily GroES-like 7.4e-51
    superfamily NAD(P)-binding domain 5.6e-40
    HMMSmart Polyketide synthase, enoylreductase 8.2e-07
    HMMPfam Alcohol dehydrogenase GroES-like 3e-29
    HMMPfam Alcohol dehydrogenase, zinc-binding 1.2e-20
    HMMPanther ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED 4.5e-110
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 4.5e-110
    Gene3D no description 1.3e-61
    PatternScan Alcohol dehydrogenase, zinc-containing, conserved site 0

    See the detailed result >

    AT4G37970.1

    Model type
    Protein coding
    Short Description
    cinnamyl alcohol dehydrogenase 6
    Computational Description
    cinnamyl alcohol dehydrogenase 6 (CAD6); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase 9 (TAIR:AT4G39330.1); Has 35385 Blast hits to 35371 proteins in 2946 species: Archae - 789; Bacteria - 23408; Metazoa - 1218; Fungi - 2700; Plants - 2633; Viruses - 3; Other Eukaryotes - 4634 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR