K29323

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29323

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29323

Determination of introduced cDNA(s)

  • J013100P21 - Rice Full-length cDNAs - Original: J013100P21

    full reading [+] show sequence

    Nucleotide sequence: J013100P21 - full reading 
    GACGTAACTG GCATAAAAAC AGGTTAAATG TTGCCGATGC AGCGCTGCTA 
    TACAAAAATG CAAGTGTAAA TTTCATTTTT CATTTCTGCC CTCCTTAATC 
    TTGGTATTAA TCACCGCAGC CAATGACGTC GTCGTGTCGG CGGCGACGTC 
    GCCGCCGCTC AAGTTCGGGA TCAACTACGG CCAGATCGCG AACAACCTGC 
    CGCACCCGAC GCAGGTGTCC GGCCTCCTCC AGTCGCTGAG CGTCAACCGG 
    GTGAGCTCTA CGACGCCGAC CCGGCCGTCC TCGCCGCCTT CGCCGGCACC 
    GGCGTGGAGT TCATCGTCGG CAACGAGGAC CTCCACAACC TGACCGACGC 
    GCGCAAGGCC CGGGCGTGGG TGGCGCAGCA CGTGCAGCCG TTCCTCCCGG 
    CCACCCGCAT CACCTGCGTC ACCGTCGGCA ACGAGGTGCT CTCCGGCAAG 
    GACACGGCGG CGATGCAGAG CCTCCTCCCG GCCATGCAGT CCGTCCACCA 
    GGCGCTGCTC GACCTCGGCC TCGCCGGCAG GGTGAACGTC TCGACGGCGC 
    ACTCCGTCAA CATCCTCGCC ACCAGCTACC CGCCGTCCGC CGGCGCGTTC 
    CGGGAGGACC TCGCGCAGTA CATCCAGCCG CTGCTCAACT TCCACGCCGA 
    GGTCGGCTCG CCGTTCCTCG TCAACGCCTA CCCGTTCTTC GCCTACAAGG 
    CGAGCCCGGC GAGCGTGTCG CTGCCGTACG TGCTGTTCGA GCCCAACCCG 
    GGCGTACGCG ACCCGGCCAC CAACCTCACC TACGACAACA TGCTGTACGC 
    CCAGATCGAC GCCGTGTACG CCGCCATGAA GGCCATGGGC CACGCCGACA 
    TCACCGTGAG GATCTCCGAG ACCGGGTGGC CGTCCAAGGG GGACGACGAC 
    GAGGTGGGCG CCACCCCGCA GAACGCCGCC GCGTACAACG GCAACCTCAT 
    GAAGCGGATC GCCGCCGGGG AAGGGACGCC GCTCAAGCCG GCCGTCCCCG 
    TCGACGTGTT CGTGTTCGCG CTCTTCAACG AGGACATGAA GCCCGGCCCC 
    TCGTCGGAGA GGAACTACGG CCTGTTCTAC CCCAACGGCA CGCCGGTGTA 
    CAACATCGGC TTCGACGCCG CGTCCTTCAG CCCGTCGCCG ACGACATCCA 
    CGTTTTCCTC CTCTTCCAGG CCAACGAGTA CATTTCTGAT GGGGGTGGTT 
    GTCCTACTCG CCGCATTCCT CCTCTGACAA TTTTCTCCAC AAGTATATTG 
    CACGAATGAT TTGGGATTGT TTTTTGACCG ATATAGTTCG ATTTGTGGTT 
    GGTTGCATAG CACAGAAAAG CAGATACATT GTTCTAACCT CGAGGTAAGC 
    TTGTCTTGAC CATGTTCTTG TTCAGTTGCT CACACAGTTT TCAGAAACCG 
    TTTTTTGTCA GTAAAATTGC CATCTTACAA GTTACAACTA GGTTATTGCT 
    TACTGTGTTA GCCATGAAAT TGATTAGTTC AGCATAATTT TGTAGACATA 
    ATGGTAGGTG ATGGGTCGAT CCTATCTCAG TGGCAAGATA TGTTTGGACA 
    TTTTCGCATC TGGTGCGTCA TGTGAAAGAT GTCGTTCAGT TAGCGCATTT 
    CCCAGGGAGG TAGGCCGGTG GTTGATCGGT TGTTGCATGT TTTAGGATTC 
    TAGCTCTGGC TATCTCTTCA GAACTCTAAA CTGACCGACC AACCAACGCC 
    CAACGAGAAG ATTCTAGTTT GCGTCATGGG CAAGAATCGA ATAAGCATTT 
    GGCACAGAAG TGGGCATTAT TCAGAAGCCA TTGATTGTTC ATCAATTTCG 
    TCAGGAACAG AGCATTAAAC TAACTAAATC CTCAATAATT TTCTCATTTC 
    GTTATCTTAA TTGTGGAATC TTGGAAGAAT TGAATTGACT GTTTGTTGTA 
    GAAAATTAGG TGGGCTTTTT TTTTCATTCT AGCATATGGA TGTTTAGGCA 
    GATCTCTTAC TATTCCTCAC AATTGAATTA GGTAGGAGTA AGAAGAGTAC 
    TCTGTCGCTA AGTTGACAAA ATGTGGAATA TATGCGAGGA CAGCGTTTTC 
    ATTCATTGTA TAGTGGAGAT GATCAAACAA GACTGTACTT TACCTGCTTT 
    TGTCAACTAT TCGCTTATAA TCAATTACTC TTCCGGTACT AAAATATAAC 
    AATTTAATAT TGGATTAGAC ACATCATAGT ACTATTAATT TGAACTGTTA 
    TATCTTGGGA CAGAGGGAAT AATTGGTAGC TCTCTTGCTG TTAAGTTAAG 
    AAAAAGTCAA ACAAAACAAT ACCCCTCTTT GTTTTCATAT ATGGCATGCT 
    GCACCAAAAT GACAAATTTA TTTGAAGACC AGTTTAATTT CTACCAAGCC 
    TAGGGAAACA AGTTTCTGTC TGAAACTTGC ATGTAAAATC TGCAATTATG 
    CTGCTAATTT TCATGCCAAC AGGCCAGCCA ATATAGCTCC TGATAATATG 
    TTGCTCCATT CATTTATAAT GCAGGATAGC AGGGTCCATT TTTCATCTAT 
    AGTTTGGATT TTAAAGATTG TAATCATAGA GCACAGGAGA AGGGTCATGC 
    ATATCATAGG CACTCCTACA CAGGAAATCG TTTTCCCCAA GGAATCAGAT 
    TCAAGCCAAG AGTTAAATTG GAAACACAGG TGGCAGTGAC TTGTTCTGTA 
    GCTGTGGTGA TTCACATCAC TTGCTGATAG AGAGTGATAG TGTTTTGTTT 
    GCTTCTATTA TTGCTGTAAA AAAAACAGTA AGTTTAATAG TCTATTCATT 
    TGGTTCCCAG TTATACGT

    Gene models with high sequence identity

    1. AT2G27500.1 [+] show detail - Glycosyl hydrolase superfamily protein
      E-value: 5e-111; Score: 44.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 17 3.4e-80
    Gene3D Glycoside hydrolase, subgroup, catalytic core 7e-95
    superfamily Glycoside hydrolase, catalytic core 9.4e-90

    See the detailed result >

    AT2G27500.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase superfamily protein
    Computational Description
    Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G32860.1); Has 2143 Blast hits to 2127 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 12; Plants - 2120; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR