K29345

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29345

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29345

Determination of introduced cDNA(s)

  • J033070F10 - Rice Full-length cDNAs - Original: J033070F10

    full reading [+] show sequence

    Nucleotide sequence: J033070F10 - full reading 
    GAGCTTTCCT CCCCCTCGAA ACCCCACCAC ACCACTGCAA CGCGTGCGAG 
    CGGCGGCGAG AGGAAGGAGG AGACCGATGG GGCGGCCGTA CGCGGTGAAG 
    GGGCGGAAGA AGAAGCGGAA GCTCGACGAC GGCGGGGCCT CCCGCGAGCC 
    CCCGGTCGAC GAAGAGGCGG CGGAGGAGCT GCCGCCGCCG GAGGGGGTGG 
    AGGAGGAGGA GGGGAAGGAG GAGGACGTGG CGGCGGCGGC GGCGGCCGGG 
    GAGGTTGCTG ATGGGCTACC CGTCGTGCCA CGGCCGGTGG ACGGGAAGCG 
    GCGGCCCGGC GCGATCTTCG TGCTCGAGAG GGCCTGCCTC GAGGTCGGCA 
    AAGTCGGCAA GACTATGCAA ATCCTGAACT CGGATGACCA TGCTAATTAT 
    TTGAGGAAGC AAAACAGGAA TCCAGCTGAT TACAGGCCTG ATATCATTCA 
    CCAGGCTCTT CTTGCAATAT TTGATAGCCC ACTAACTAAA GCTGGGAGGT 
    TACAAGCTGT TTATGTTAGG ACTGAAAAGG GAGTATTGTT TGAAATCAAG 
    CCTTACGTCC GCATGCCACG TACATTCAAA CGTTTTTGCG GTTTAATGTC 
    ACAATTATTG CAGAAGTTGA GCATTACAGC AGTTGGAAAG CGGGAGAAGC 
    TTCTTAATGT CATTAAAAAT CCAGTCACCC GCTATCTACC AGTTGGAGCA 
    AAGAAGATTG GTCTTTCATA TAGTGCTGAG AAGTCAGTCA ATTTGTTTGA 
    CTATGTTGCC AAATCCAGTG ACGATGTACC CCTTGTGTTT GTGGTAGGTG 
    CTATGGCTCA TGGAAAGATT GACAACGAAT ACTCAGATGA TTACATACAA 
    ATTTGCAATT ACCCTCTCAG TGCTGCCTGC TGTTTGAATC GAATATGCAG 
    TGCTCTCGAG CAGAAGTGGA ACATCCAGTG AAAGGAAATT TTGAAAACGA 
    ACACTGAAAA ACATTATGTG AAATTGTTGT GTACTCGCTA GCTAATGCAA 
    TTTTGCGGTC TCCTCCCATG CTGAGTGTGT ACTGTATTCT GATTGTGGAG 
    ACTTGAAAAC TCCGGTGGTA ATAGTGTTAA AGTTCAATTT TTGTCGCAAC 
    AATATGTT

    Gene models with high sequence identity

    1. AT3G57000.1 [+] show detail - nucleolar essential protein-related
      E-value: 4e-76; Score: 281.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal biogenesis, methyltransferase, EMG1/NEP1 2.4e-67
    HMMPanther NEP1-RELATED 2.8e-121
    HMMPanther Ribosomal biogenesis, methyltransferase, EMG1/NEP1 2.8e-121

    See the detailed result >

    AT3G57000.1

    Model type
    Protein coding
    Short Description
    nucleolar essential protein-related
    Computational Description
    nucleolar essential protein-related; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis, methyltransferase, EMG1/NEP1 (InterPro:IPR005304); Has 1079 Blast hits to 938 proteins in 280 species: Archae - 143; Bacteria - 12; Metazoa - 353; Fungi - 181; Plants - 69; Viruses - 2; Other Eukaryotes - 319 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR