K29351

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29351

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29351

Determination of introduced cDNA(s)

  • J023011C17 - Rice Full-length cDNAs - Original: J023011C17

    full reading [+] show sequence

    Nucleotide sequence: J023011C17 - full reading 
    GGGAGGAGGC TGGCGGGGCA GCCGGCGATG GGCGGACTGC GGAGGACGGA 
    GGCGGTGCCT CGTTTTGGCA GGTCCTCCCC TTTTCTCTCC CTTCTTCCTC 
    TCTCTCTCTC TCTCTTACTC GTTTTGGTGG GCCGGTCGGC GGGAGCGGAA 
    GAGGTCTGGT GGCCGGTGAC GAGCTACACG ATGGCGGCAG CGACTTTGTG 
    TGGCGGCGAC AAGGATGGAG TTGACCTGCA GATAGAGCGC TGCCTTTCCC 
    CACAACTCCC GCACCGAGCG CACGTGAAGA GGGAGGAGGC GGGAAGGCCA 
    GCAGCGGCCT GTTCCTCGTC GTCGTCGTTC TGCGGCAACA CCAGCTGCCG 
    GACCTCTTCC TCTCCCCTCC CCCCAGCGGC GCGCGGCGGA GGAAGCCGCG 
    GCGCCGTCCT CCTCCTCTCC CGTCTCACCC CATCGACGCC CGCGCCATCC 
    CGCCGCCCGT CGATGCCCGC GCCTCCCCAT TGACGATGGG GGCGAGGTTG 
    ACGGCGATGG GGGCGACGGA GGCGCCACTC TCCCCAGCGC CAACAAGTCC 
    CCCTCATCCT CGTCCTCCGG GGCGCTCGAC GGAGACGCGG CGGAGGCCGA 
    GGCGCGCCGC CGGCTGACAA GCTCGCTGCG GGAGGCACTC GGGCTGTACC 
    GGGACATCCT CCGGGTCACG TGGCTGTTCG AGTGGCCCGA CGACCGTGGC 
    GATTACGACG GCATCGTGAC GGAGTACGAC GTGGAGTGCG GTGTGCTGGT 
    GTGGGAGCGC GACGAGCACG AGGGGCGGCG GGTGTGGGCG ACGGCGCGGC 
    ATCGCCCCGT CCTCTTCGCG CTCACCCTGG CCACCGCCGC AGTCGCCCTA 
    CCCTTCTCCC CCAGGGCGCC GGCCGCCGTC GCGCCGCCGC CGCCCTCCTC 
    TCTCCCGTCT CGCCTGCCGA CGTCGCGCCG CCGCTTTGCC TCACCGAGAA 
    ACCGCCTAGA AAGAGAGAAG TGGAAAAGGA GGGAAGTGAT GATGTGGCTT 
    CCTAGCATGT GGGGCCCACG TGGGTCCCAC GCTGACTCAG CAGCCACGTA 
    GGACAAAACC GGGGTCAAAA CCACCTAAGG ACCTCGGGTG ACCGGTTTTA 
    TATAGTTAAG GGACCTCGTG TATCTGGTTT TGCGGTTCGA GGACGTTTTT 
    GTATCCCGAT GACAAGTTGA GGGACCTTTG GTGTACTTTT TCCTTAAATA 
    TTATTTCCTC CGTTTTACAT ATATATGTCT AGATTCATTA ACATCAATAT 
    GAATGTGGGA AATGCTAGAA TGATTTACAT TGCG

    Gene models with high sequence identity

    1. AT5G52250.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 5e-07; Score: 52.80

     

    InterPro Scan Digest

    See the detailed result >

    AT5G52250.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Curator Summary
    Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response.
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23730.1); Has 19305 Blast hits to 12811 proteins in 562 species: Archae - 16; Bacteria - 3753; Metazoa - 6674; Fungi - 4562; Plants - 2007; Viruses - 0; Other Eukaryotes - 2293 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR