K29413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29413

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29413

Determination of introduced cDNA(s)

  • J023004O11 - Rice Full-length cDNAs - Original: J023004O11

    full reading [+] show sequence

    Nucleotide sequence: J023004O11 - full reading 
    TGGCCTTCCT CCCATCTTTC TCTCTCTTTG CACGCGGATC TCCACACTCC 
    GCACCGCCGG AACCCTAGCC GCCGCCCGTC GCCGCCGATT TTTTTTACCC 
    CTGGTCGCCG CTCCGTCGTG GCGAGCGGGC GGGATGAGCA GCCACCGGAA 
    GAACTTCCGC CGCCGCACGG ACGACGCCGA GGACGCCTAC GGGGACGACT 
    CGAGCAACTC CAAGCCCACA GCCACCAAGA CCCAAACCCC TCCCGTTCCC 
    AAGCCCAGGT CGCCGAGACG TCAGGGCGCG AGCCGCCTCA GCTTCGTCGA 
    GGACGAGGAC GACGATGACG CCGAGGAGGG ACCTTTGTCG CAGCGCCGCC 
    GCCCGGCTGC TACGGTCCGG CAGGCCCGCA CGGCATCGCC AGCTGCGGCG 
    ACTCTCCACC GCCTCACGCC CGCCAGGGAC CGCCTCAAGA GCTCTACGGC 
    CGTGGCAGCG GCGGTTCCCG CGCCGAAGCC GTCCAACTTC CAGTCGCATG 
    CTGGAGAGTA CACGCCGGAG CGCCTCCGTG AGCTCCAGAA GAACGCCCGC 
    CCACTCCCTG GGAGCCTCAT GCGTGCACCG CCGCCCCCTC CCCCTCCAAC 
    CGCTGAAGCC CCACGACAGC GTTTGCCTGG AGCTGCCGCC AGTCCTGCTC 
    CTGCTACAAA CACCACTGCT GCTGCTGTAG AGCCCGTGGT GATTCTCAAA 
    GGTCTGGTAA AACCTATGTC ACAAGCTAGC ATTGGACCAA GGAATCCATC 
    GCAGAACGAG GACAAAGACG AAGATGAGTC AGAGGAAGAG GAGGAGGAGG 
    AAGAAGGACC AGTCATACCT GACCGCGCAA CAATTGAAGC TATCCGAGCA 
    AAGCGGCAGC AGCTTCAACA GCCGAGGCAT GCAGCACCGG ATTACATCTC 
    CCTTGATGGA TGTGGTGTGC TTAGCAGTCG TGAAGCTGCT GGTGGATCCA 
    GCGACGAGGA TGATGATGAG ACACGCGGCC GTATTGCAAT GTACGCTGAG 
    AAGTCAGATA GCCAGAGGAG CACGAAAGGT GTATTTGGCG TGATCAATAA 
    TAGAGGTCCT GCTGCCAGTT TGGGGGTTAT CAATGATGGT TTCAGGGAGG 
    TTGAGGATGA AAAGGATGAC GATGAGGATG AGGAAGAGAG GAAATGGGAG 
    GAGGAGCAGT TCAGGAAGGG GCTTGGTAGG AGGGTGGATG ATGCTTCTGC 
    TCAGAGAGCA GCGAATGGTG GACCAGCTCC TGTGCAGGTC CAGCCGCAAC 
    CATCCGGATA CTCAATCGAT CCCCGTTACC AGCCTTCCTT TAGCGGGGTT 
    TTGCCTGGGA CTTCTATTTT TGCATCTGGG AGTGCAGAGT TCCTGTCAAT 
    CGCTCAACAA GCTGATGTAG CAAGCAAAGC CCTGCAGGAG AACATCAGGA 
    AGCTTAAGGA GACCCATAAG ACAACAGTGG ATGCTTTAGT CAAGACTGAC 
    ACACATCTTA CTGAAGCTCT TTCAGAGATA TCTAGCCTTG AGAGTGGTTT 
    ACAAGATGCA GAAAGGAAGT TTGTGTACAT GCAGGAGCTC CGAAATTACA 
    TTTCTGTCAT GTGTGATTTC TTGAATGATA AGGCATTCTA TATAGAGGAA 
    TTGGAGGAGC ACATGCAGAA GCTGCATGAG AATCGAGTGA CTGCTGTCTC 
    AGAGAGGAGG GCAGCTGATC TAGCTGGTGA ATCAAGTGTT ATCGAAGCTG 
    CCGTCAATGC AGCAGTATCT GTCCTTAGCA AAGGATCAAG CTCAGCTTAT 
    CTATCTGCTG CATCTAATGC TGCACAAGCG GCGGCAGCTG CTGCTAGGGA 
    AAGTTCAAAC CTACCACCTG AGCTGGATGA ATTCGGCAGA GATATCAATA 
    TGCAGAAGCG AATGGATCTT AAGCGTAGGG AAGAAGACAG GAGGCGAAGA 
    AAAATTCGAT CAGAATCTAA AAGGTTGTCA TCTGAAGGGA GGAGTGCAAA 
    TAATGAACAT ATCGAAGGGG AACTAAGCAC TGATGAGAGT GATAGTGAGA 
    GCAGTGCCTA TCTGTCCAGC CGTGATGAGT TGCTCAAGAC TGCTGATCTT 
    GTATTCAGTG ATGCTGCCGA GGAATACTCA AGCCTTAGAA TTGTTAAGGA 
    CAAGTTTGAA GGATGGAAAA CTCAGTATCC TCTGGCTTAC CGAGATGCTC 
    ATGTAGCTCT GAGTGCGCCA TCTGTGTTCA CCCCTTATGT CAGACTGGAG 
    CTTTTGAAGT GGGATCCTCT CCATGAAACA ACTGATTTCT TTGGCATGGA 
    GTGGCACAAG ATTCTTTTTG ATTATGGTGA GCAAAACAGT GAAAGTGGCA 
    CTGACCCTAA CAATGTGGAC AAGGACCTCA TTCCAGTATT AGTAGAGAAG 
    GTGGCTCTTC CTATTTTGCA CCACCGTATT ATGCACTGTT GGGATATTTT 
    AAGCACCCAA AGAACCAAAA ACGCTGTGGA TGCAATTAAT ATGGTCATTA 
    GCTATTTACC AACCTCAAGC AAGGCATTGC ATCAACTATT GGCCGCTGTC 
    AATAGTCGTC TGACTGAGGC CATTGCTGAC ATTTCAGTGC CAGCTTGGGG 
    ATCAATGGTG ACAAGGACTG TTCCAGGTGC TTCGCAGTAT GCTGCTCATA 
    GATTTGGAGT TGCGATACGT CTTCTTAAAA ATGTGTGTTT GTGGAAGGAT 
    ATTTTTGCAA AACCTGTTTT AGAGAAGCTT GCTCTGGAAG AATTGTTGAA 
    GGGGAAAATT CTTCCTCATA TGAAGAGTAT CATTTTGGAT GCCCATGATG 
    CAATTGCTAG GGCTGAGCGG ATATCTGCAT TACTTAAAGG AGTGTGGTCT 
    TCACCAAGCC AAAAGTTGCA GCCTTTCATA GATCTCGTGG TAGAACTAGG 
    AAACAAGTTG GAGAGGCGAC ACATGTCAGG CATAAGTGAG GAAGAGACAC 
    GTGGGCTGGC TCGTCGTTTG AAAGACATAT TGGTAGAACT GAATGAATAT 
    GATAAAGCTA GAGCTATTTT GAAGACTTTT CAGATCAGAG AAGCCCTTTA 
    GCTCTTATTC GGCATACCAC AAGAATTCCA GTTTTGACTG TGATACAGGT 
    TCTTAATCCT TCTGCTTTAG GAAATGTTGT AACTTCATCA GGTTTTCTGT 
    ACATTAAATG ATCATGAGTT CCTCGTTCAA TCCTGCATGA TGTTATCCAT 
    ACAAATTTTA TGGGGGCTTC TCAATTCAGA AATTATGGTC ATTTTTAATT 
    ACCATTTACC AATGCT

    Gene models with high sequence identity

    1. AT5G08550.1 [+] show detail - GC-rich sequence DNA-binding factor-like protein
      E-value: 1e-145; Score: 514.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam GCFC 1.9e-36
    HMMPanther GC-rich sequence DNA-binding factor-like 1.8e-102

    See the detailed result >

    AT5G08550.1

    Model type
    Protein coding
    Short Description
    GC-rich sequence DNA-binding factor-like protein
    Curator Summary
    Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression.
    Computational Description
    increased level of polyploidy1-1D (ILP1); CONTAINS InterPro DOMAIN/s: GC-rich sequence DNA-binding factor-like (InterPro:IPR012890); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein (TAIR:AT5G09210.1); Has 786 Blast hits to 745 proteins in 186 species: Archae - 2; Bacteria - 46; Metazoa - 439; Fungi - 95; Plants - 69; Viruses - 1; Other Eukaryotes - 134 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR