K29544

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29544

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29544

Determination of introduced cDNA(s)

  • J033104P17 - Rice Full-length cDNAs - Original: J033104P17

    full reading [+] show sequence

    Nucleotide sequence: J033104P17 - full reading 
    GGAGTTGTTG TTGTTGAGGA GGAAGTGAAG AAGAGGCAGT AGAAAGAAGT 
    AGCAGTAGCA GAAGAGAAGG GAGGAAGGGA ATTGGATAGA TGGCGGGGAC 
    GCGGCGTGCG GAGGAGGAGT ACGACTACCT GTTCAAGGTG GTTCTCATCG 
    GCGACTCCGG CGTCGGCAAG TCCAACCTCC TCTCCCGTTT CACCCGCAAC 
    GAGTTCTGCC TCGAGTCCAA GTCCACCATC GGCGTCGAGT TCGCCACCCG 
    CACCCTCCAT GTGGAGGGCA AGATAATCAA GGCGCAGATC TGGGACACCG 
    CAGGTCAAGA GCGATACAGA GCTATCACCA GCGCTTACTA CCGTGGAGCT 
    CTAGGAGCAG TCCTGGTCTA CGACGTGAGC AAGCCCACAA CCTTTGACAA 
    CATCAGCCGG TGGCTCAAGG AGCTCCGCGA CCACGCTGAT GCAAACATCA 
    GAATCATGCT CGTCGGCAAC AAGACTGATC TGAAGCACCT TCGGGCCGTC 
    GCGACAGACG ATGCGCACAA GTTTGCTGAG GCAGAAGGGC TGTCCTACAT 
    TGAGACTTCA GCTCTTGAGG CCACAAATGT GGAGGAGGCA TTCCAGCTGA 
    TTCTCGGTGA CATTTACAGG GCCATCAGCA AGAAGCCCGT GGCATCAGAT 
    GAAGGCGGGG CAGGTGCCGC TGGAGGTGTC AAAGAAGGGA AGACGATCAA 
    TGTCGCTGCC GGTGATGCCA ATAGTGAAAA GAAGCAATGC TGCTCAACTT 
    AGAACGAATC CTTCAGTTTC AGATGTCATT TCGTGTACCT TGTGTGGTGC 
    TTGTGATTGT TCTTTCTTTT TAAGTTTATT AAAGCTTCGT TGATTCATTT 
    TGTCAGATAA ATATTTACCT TGCT

    Gene models with high sequence identity

    1. AT1G09630.1 [+] show detail - RAB GTPase 11C
      E-value: 2e-92; Score: 335.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Small GTPase 34.902
    Gene3D no description 8.6e-63
    HMMSmart Ras small GTPase, Ras type 5.2e-24
    HMMSmart Ras small GTPase, Rab type 2.7e-108
    HMMSmart Small GTPase, Rho type 2.6e-12
    HMMSmart Ran GTPase 4.6e-10
    HMMPfam Ras 1.5e-59
    HMMTigr Small GTP-binding protein 8.5e-41
    FPrintScan Ras GTPase 7.1e-41
    FPrintScan Ras GTPase 7.1e-41
    FPrintScan Ras GTPase 7.1e-41
    FPrintScan Ras GTPase 7.1e-41
    FPrintScan Ras GTPase 7.1e-41
    HMMPanther Rab11-related 2.2e-89
    HMMPanther RAS-RELATED GTPASE 2.2e-89
    superfamily P-loop containing nucleoside triphosphate hyd 1.6e-63

    See the detailed result >

    AT1G09630.1

    Model type
    Protein coding
    Short Description
    RAB GTPase 11C
    Curator Summary
    Encodes a putative GTP-binding protein. Associates with organelles on a pathway from the Golgi to the plasma membrane in interphase. In dividing cells acts at the cell plate.
    Computational Description
    RAB GTPase 11C (RAB11c); FUNCTIONS IN: GTP binding; INVOLVED IN: cytokinesis; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2B (TAIR:AT1G07410.1); Has 27576 Blast hits to 27520 proteins in 758 species: Archae - 26; Bacteria - 154; Metazoa - 14618; Fungi - 3770; Plants - 3044; Viruses - 20; Other Eukaryotes - 5944 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR