K29724

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29724

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K29724

Determination of introduced cDNA(s)

  • J033121A10 - Rice Full-length cDNAs - Original: J033121A10

    full reading [+] show sequence

    Nucleotide sequence: J033121A10 - full reading 
    GACTCTCCGT CCCTCGGTAA CTGTAAGCTC CTCATGGCGA GCCGGAGCCG 
    GTGACCGCTG GCGGCGGCGG CGGCGGCGGC GGAGGCGGAG GCGGGAGGCG 
    AGGGTTACTC GGGATACGGC GGCCCGAGAG GAGATGGCAG CAGGTTGCAA 
    CAGGCGTTCC ATGGTTTCAG GGCTCCACAC CCTCCGGGTG ACGCCGAGCC 
    GGGGAGTATC GCCGTCTTGG AGAACCTAGG CCTCCTATCG CCAAATCTAC 
    GCCCATCAAC GAGACCTATC AGCTGCACTG GGATTACTTC CGAGGGGAAT 
    AATAGAAATG GCTGGAGAGA CTTGATGAAG ATGGATAGGT GGGTGACTGA 
    ACCCTTGGGT GATAGCTGGT TGTTGGCAAC TTGGCGTGCA ACTTGGTACA 
    TCACTCATTA CAGGGAGAAG CGCATGCTAG TTGAGATGGA GGAGCTCCTC 
    TGCTTCTTCA CGGTAGAACA TCACTATCAC AGAATTTGGA GGCTTATCTG 
    GAGCAGTGGC TAGAAGTGAA TGGACTGCAA ATTTGATAGA TCCTTCTAGA 
    CTGCAGCTGG AAAGATGACC TGCTAGAAGA GGCAGATTTA AGGCTTGATG 
    GATAGAGGAG AGAGGAACCT AGTCCAAATG AAAACACCTA TAAGTAAGTA 
    GCAGCTGGCC ACAAGTACAT GACGACCTAC GCACTGCTGC TGCTCCAACT 
    GGCCTGCATC GTATTCTGCA AGGGTTTGGT TTGTCACTCA CTCCTCATGA 
    GTTAGTTTCT GCCAGAAAGA GTGAAAATTT ACCATTGTTG GACTTTTACT 
    GAGGAATATA AATAGCTCTT ATGGGACATC TAAATTGTGC TGTCCTTTTT 
    TCAGCTTTGC ATATAATAGG AAGGTGATAC ACAATACTCA TAGCGTTGGC 
    ATGAAGCCTA TTGCAATTGG ACAGTCGTTC GTTCTGCTAC TGGTTTTTAG 
    TACTGTGAGT GTTGTCATTT GCTCTGATGG AAATGAGACA GATCGGCTGT 
    CACTGCTTCA GTTCAAACAG GCTATCAGCC TCGACCCACA GCATGCCTTG 
    CTCTCCTGGA ATGATAGCAC CCATTTCTGC AGCTGGGAAG GTGTCTCATG 
    TAGTTTGAGG TATCCACGTC GTGTCACTTC CCTTGATCTA TCTAACAGAG 
    GTTTGGTGGG GCTCATATCT CCTTCACTTG GAAACCTGAC ATCTCTTGAA 
    CACCTCTTCC TGAATACCAA TCAACTCAGC GGACAAATCC CTCCGTCACT 
    TGGTCACTTG CATCACCTTC GATCACTTTA CTTAGCAAAC AACACGCTAC 
    AAGGCAACAT ACCTAGCTTT GCTAATTGTT CTGCTCTCAA AATACTTCAT 
    CTAAGCCGCA ATCAGATTGT TGGACGTATT CCCAAAAATG TTCATTTACC 
    ACCAAGTATT AGTCAACTGA TAGTAAACGA TAATAACCTT ACTGGTACCA 
    TCCCCACTTC ACTTGGCGAT GTTGCGACAC TAAATATACT TATTGTTTCA 
    TACAATTATA TTGAAGGCAG TATCCCGGAT GAAATTGGAA AGATGCCTGT 
    CTTGACAAAC TTGTATGTGG GTGGAAACAA TTTATCTGGT CGATTTCCAC 
    TAGCTCTCAC AAACATTTCT TCTCTTGTTG AACTGGGACT TGGCTTCAAT 
    TATTTTCATG GTGGTCTGCC GCCAAATCTT GGTACTTCTC TACCCAGGCT 
    TCAGGTGCTT GAAATAGCTT CTAATCTCTT TGAAGGACAC CTCCCTTATT 
    CCATTTCAAA TGCTACTAGT CTTTACACCA TAGACTTTTC AAGCAATTAT 
    TTCTCTGGGG TGGTGCCAAG TTCCATCGGT ATGCTTAAGG AGCTTTCCTT 
    GTTGAATCTT GAGTGGAATC AGTTTGAGTC GTTCAATAAT AAAGATTTGG 
    AGTTCCTGCA CAGCCTAAGC AATTGCACTG ACCTTCAAGT GCTGGCACTG 
    TATGACAATA AACTGAAGGG ACAGATACCA TATTCATTAG GCAACCTTTC 
    TATCCAGCTT CAGTACCTCT TTCTGGGAAG CAATCAACTA TCAGGGGGCT 
    TTCCCTCTGG CATAAGAAAC CTTCCCAACC TGATTTCTCT AGGTTTGAAT 
    GAAAACCATT TTACCGGGAT AGTTCCAGAA TGGGTTGGCA CACTTGCAAA 
    TTTGGAAGGC ATATACTTAG ATAACAACAA GTTTACAGGT TTTCTTCCAT 
    CATCCATATC CAATATATCA AACCTGGAAG ATCTCCGCCT TTCCACAAAT 
    CTATTTGGAG GAAAAATACC TGCAGGCTTG GGAAAACTCC AAGTCCTTCA 
    TCTAATGGAA CTTTCTGATA ACAATCTCCT TGGCAGCATA CCAGAGAGCA 
    TTTTCAGCAT TCCAACGTTG ACACGTTGTA TGCTATCTTT CAACAAACTA 
    GACGGGGCAC TTCCCACTGA AATTGGCAAT GCCAAGCAAC TTGGATCTCT 
    GCATCTATCA GCAAATAAGC TTACTGGGCA TATTCCTAGC ACCTTGAGTA 
    ACTGTGATAG TTTGGAAGAA CTACACTTAG ATCAAAATTT TCTTAATGGA 
    AGCATCCCCA CATCATTAGG AAATATGCAA AGCTTAACAG CAGTCAACCT 
    GTCTTATAAT GACCTATCAG GATCCATACC AGATTCTCTT GGTAGATTGC 
    AATCTCTTGA GCAACTAGAT TTGTCATTCA ACAATCTGGT AGGAGAAGTC 
    CCAGGCATAG GGGTTTTCAA GAATGCAACT GCCATACGGT TAAACAGAAA 
    TCATGGGCTT TGTAATGGGG CACTGGAGCT GGACCTACCC AGATGCGCTA 
    CTATATCTTC TAGTGTTAGT AAGCACAAAC CATCTCATCT ACTCATGTTT 
    TTTGTCCCAT TTGCCAGTGT GGTTTCACTA GCTATGGTCA CATGTATCAT 
    CCTGTTTTGG AGGAAAAAAC AGAAAAAAGA ATTTGTCTCG TTACCTTCTT 
    TTGGTAAGAA GTTTCCCAAA GTTTCTTATA GGGATCTAGC TAGGGCAACA 
    GATGGGTTCT CTGCATCCAA TTTAATTGGC ACCGGAAGAT ATGGTTCAGT 
    ATATATGGGG AAGTTATTTC ATAGTAAATG TCCAGTTGCT GTGAAAGTCT 
    TCAATCTTGA CATAAGAGGA ACACAGAGGA GCTTTATATC AGAATGTAAT 
    GCTTTAAGAA ATCTTCGGCA TCGCAACATT GTACGGATTA TAACAGCTTG 
    CTCAACAGTT GATTCGAAAG GAAATGATTT CAAGGCTTTA ATTTATGAAT 
    TCATGCCCAG AGGTGACCTG TATCAAGTCC TATATTCAAC CTGTGCTGAT 
    GAAAATTCTT CAACTAGCCA TTTTGGTTTG GCCCAAAGGG TTAGCATAGT 
    GATGGATATA GCCAATGCAT TGGAGTACCT GCACAATCAT AACAAAGGAA 
    TTATTGTTCA TTGCGATCTG AAGCCTAGCA ACATTCTCTT GGATGATAAT 
    ATGACTGCTC ATGTTCGTGA CTTTGGCCTT TCAAGGTTTG AAATTTATTC 
    CATGACATCA TCTTTTGGTT GCTCAACTTC TTCAGTTGCA ATCAGTGG

    Gene models with high sequence identity

    1. AT3G47570.1 [+] show detail - Leucine-rich repeat protein kinase family protein
      E-value: 6e-179; Score: 625.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.8e-55
    Gene3D no description 3.9e-18
    Gene3D no description 3.8e-61
    Gene3D no description 3.6e-24
    superfamily L domain-like 7.1e-64
    superfamily L domain-like 1.6e-55
    superfamily Protein kinase-like domain 4.6e-47
    HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 1.4e-178
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.4e-178
    HMMSmart Leucine-rich repeat, typical subtype 11
    HMMSmart Leucine-rich repeat, typical subtype 250
    HMMSmart Leucine-rich repeat, typical subtype 410
    HMMSmart Leucine-rich repeat, typical subtype 180
    HMMSmart Leucine-rich repeat, typical subtype 68
    HMMSmart Leucine-rich repeat, typical subtype 62
    HMMSmart Leucine-rich repeat, typical subtype 62
    HMMSmart Leucine-rich repeat, typical subtype 20
    HMMSmart Serine/threonine-protein kinase domain 9.7e-08
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.5e-07
    HMMPfam Serine/threonine-protein kinase-like domain 3.8e-30
    HMMPfam Leucine-rich repeat 0.4
    HMMPfam Leucine-rich repeat 0.15
    HMMPfam Leucine-rich repeat 1
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 4.3e-12
    ProfileScan Protein kinase, catalytic domain 27.128
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT3G47570.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat protein kinase family protein
    Computational Description
    Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47580.1); Has 213556 Blast hits to 133070 proteins in 4776 species: Archae - 194; Bacteria - 22980; Metazoa - 68117; Fungi - 10236; Plants - 86850; Viruses - 328; Other Eukaryotes - 24851 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR