K29808

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29808

Determination of introduced cDNA(s)

J033029E14 - Rice Full-length cDNAs - Original: J033029E14

full reading [+] show sequence

TGGGCTCGCA CATGGTTCGC CGCCTTTCGG TGAGATCCCC GCGGCTGCAG 
CGAGCTCGCA GGCCGCCGCC TTCCGCGCCG CCGACCACCG CGCCCATGGA 
CCCCCCCTCG CCGCCGCCGC CGCCGCCATA TCCTCCTGCT GCTGCTGAGG 
GCGGTCCGGC AGCGGATAGC CAGGCCGCTG AGCTGCCCCG GCTGACTGTG 
ACGCAGGTGG AGCAGATGAA GGTGGAGGCG AAGGTGGGCG AAATCTACCG 
CGTCCTCTTC GGCAACGCGC CCAACGCCAA TTCCCTCATG TTAGAGCTGT 
GGCGTGAGCA GCATGTTGAG TATTTGACGA GAGGGCTGAA ACATCTTGGA 
CCAAGCTTCC ATGTGCTCGA TGCCAATCGA CCTTGGCTGT GCTACTGGAT 
TATTCATGCA CTTGCTCTGT TGGATGAAAT ACCTGACGAT GTTGAGGATG 
ATATTGTGGA CTTCTTATCT CGATGTCAGG ACAAAGATGG TGGTTATGGC 
GGAGGACCTG GACAGTTGCC TCATCTCGCT ACAACTTATG CTGCTGTAAA 
TACACTTGTA ACTATAGGGA GTGAAAGGGC ACTATCATCG GTAAACAGGG 
ACAACCTGTA CAAGTTCATG CTTCGGATGA AAGATACATC GGGAGCTTTC 
AGAATGCATG ATGGTGGTGA AATAGATGTT CGTGCTAGCT ATACTGCAAT 
ATCGGTTGCC AGCCTTGTGA ACATTCTTGA TGGTGAACTA GCAAAAGGTG 
TTGGAAATTA CATAACAAGG TGTCAAACCT ATGAAGGTGG CATTGCTGGG 
GAACCGTATG CTGAAGCTCA TGGTGGGTAC ACTTTTTGTG GGCTGGCTAC 
GATGATCCTG CTTAACGAAG TGGACAAACT TGATTTGGCT AGCTTGATTG 
GCTGGGTGGC ATTTCGCCAA GGAGTGGAAT GTGGATTTCA AGGACGAACT 
AATAAATTGG TTGATGGTTG CTACTCCTTT TGGCAGGGAG CTGCTCTTGC 
TTTAACACAA AAACTAATGA CAGTTGTTGA TGAGCAATTA AAATCATCAT 
ATTCCAGCAA AAGGCCTCCA GGAGATGATG CTTGTGGTAC GAGCTCTTCT 
ACTGAAGCAG CATATTATGC TAAGTTTGGA TTTGATTTTA TAGAGAAGAG 
CAACCAAATA GGCCCACTGT TCCACAACAT CGCGCTGCAG CAATACATCC 
TGCTTTGCGC ACAGGTGCTG GATGGAGGGT TGAGGGATAA GCCTGGGAAG 
AACAGAGATC ACTACCACTC GTGCTACTGC CTGAGTGGTC TGTCAGTTAG 
CCAGTACAGC GCCATGGTTG ATTCTGATGC GTGCCCCTTG CCGCAGCACG 
TGCTTGGTCC TTACTCAAAC TTGCTAGAGC CGATCCATCC GCTCTACAAT 
GTTGTACTAG ACAAATACCA TACGGCCTAT GAGTTCTTTT CAAGCTAGTG 
ATACAACTGT CTAGGACATG TATGATATGT ATGAGCTCTA CAATGTTGCG 
CCTTACAAGT TACAACTGTC TAAGACATGT ATGATATTTC ATTCTTTTTT 
ACACTGACTG AACGGCCCCA GATACCAAAA GTCCATATAA ACTCGC

Gene models with high sequence identity

AT5G40280.1 [+] show detail - Prenyltransferase family protein
E-value: 6e-120; Score: 428.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (CAA	1.6e-156
HMMPanther	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	1.6e-156
superfamily	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid	8.3e-113
HMMPfam	Prenyltransferase/squalene oxidase	1.9e-11
HMMPfam	Prenyltransferase/squalene oxidase	1.7e-08
HMMPfam	Prenyltransferase/squalene oxidase	2.2e-08
HMMPfam	Prenyltransferase/squalene oxidase	1.1e-07
Gene3D	no description	1.4e-130

See the detailed result >

AT5G40280.1

Model type: Protein coding
Short Description: Prenyltransferase family protein
Curator Summary: encodes a beta subunit of farnesyl-trans-transferase, which is involved in meristem organization and ABA-mediated signal transduction pathway. Mutant phenotypes have been observed in meristem organization, and response to abscisic acid and drought.
Computational Description: ENHANCED RESPONSE TO ABA 1 (ERA1); CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 2 (TAIR:AT3G12070.2); Has 2257 Blast hits to 1610 proteins in 263 species: Archae - 4; Bacteria - 30; Metazoa - 707; Fungi - 630; Plants - 303; Viruses - 4; Other Eukaryotes - 579 (source: NCBI BLink).
Link: InterPro Scan - TAIR