K29826

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29826

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29826

Determination of introduced cDNA(s)

  • J033122O18 - Rice Full-length cDNAs - Original: J033122O18

    full reading [+] show sequence

    Nucleotide sequence: J033122O18 - full reading 
    GACTCACCTC CTCTGCTTCT CCCACCACCT CACTACCTCT CGCCGCGAGA 
    GCAGCAGCGC TCGTGTTCGG TCAAAAGCCT CGCCGCGGCG AGCTCGAGCT 
    CATTCGCATT CCGGAGGGGA GGGAGGGATG GGGGACGAGT CGGAGGGGGA 
    GACGGAGGAG TACCTGTTCA AGGTGGTGAT CATCGGGGAC AGCGCGGTGG 
    GGAAGAGCAA CCTGCTGTCC CGCTACGCCC GCAACGAGTT CAATCTCCAC 
    TCCAAGGCCA CCATCGGCGT CGAGTTCCAG ACGCAGAGCA TGGACATCAA 
    CGGCAAGGAC GTCAAGGCCC AGATCTGGGA CACCGCCGGC CAGGAGCGCT 
    TCCGCGCCGT CACCTCCGCC TACTACCGCG GCGCCTTCGG CGCCCTCCTC 
    GTCTACGACA TCTCCCGCCG CTCCACCTTC GACAACGTCG GTCGCTGGCT 
    CCAAGAACTC AACACACATT CGGACACGAC TGTAGCCAAG ATGTTGGTGG 
    GCAACAAGTG TGATCTGGAT AATATCCGTG AAGTGCCGGT AGAGGAAGGC 
    AAAGCACTTG CTGAAGCTGA AGGGCTGTTC TTCATGGAGA CCTCTGCTCT 
    GGACTCGACA AACGTGAGGA CAGCTTTCGA GATCGTAATC AAGGAGATCT 
    ACAGCAACGT GAGCAGGAAG ATCTTGAATT CGGACTCCTA CAAGGCGGAG 
    CTATCCCTCA ATAGGGTAAG CATTGAGGGT GATTCGAAGG ATGATCAGAA 
    ACAGTCAAAC CGGTTTGGAT GTTGCTAGGG GTTTTAGTAC ATTATTATTA 
    TTGGATTCAC TGTGATATGA AGGTTTTTTG TTCATTAATA TTATTATTAT 
    TATCTGTAAA CTTGTAATCC AAATTGTTTT TTGGTTTGGT TACTCTGGTA 
    CACACTGTGA CACTGAGATA CAAAGTGAGA GAAGAATAGT TGCTGGTAAT 
    GAATAGTTGA GAGGACTGCT TTGTGCTGTT ACCT

    Gene models with high sequence identity

    1. AT2G31680.1 [+] show detail - RAB GTPase homolog A5D
      E-value: 6e-81; Score: 297.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Ras small GTPase, Ras type 8.9e-25
    HMMSmart Ras small GTPase, Rab type 1.2e-103
    HMMSmart Small GTPase, Rho type 4.6e-12
    HMMSmart Ran GTPase 5.2e-05
    HMMTigr Small GTP-binding protein 1.8e-33
    HMMPfam Ras 1e-59
    Gene3D no description 2.9e-61
    FPrintScan Ras GTPase 1.3e-38
    FPrintScan Ras GTPase 1.3e-38
    FPrintScan Ras GTPase 1.3e-38
    FPrintScan Ras GTPase 1.3e-38
    FPrintScan Ras GTPase 1.3e-38
    superfamily P-loop containing nucleoside triphosphate hyd 1.6e-59
    ProfileScan Small GTPase 34.127
    HMMPanther Rab11-related 4.2e-86
    HMMPanther RAS-RELATED GTPASE 4.2e-86

    See the detailed result >

    AT2G31680.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog A5D
    Computational Description
    RAB GTPase homolog A5D (RABA5d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5E (TAIR:AT1G05810.1); Has 27628 Blast hits to 27593 proteins in 754 species: Archae - 22; Bacteria - 125; Metazoa - 14573; Fungi - 3749; Plants - 3264; Viruses - 20; Other Eukaryotes - 5875 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR