K30010

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30010

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30010

Determination of introduced cDNA(s)

  • J013108G13 - Rice Full-length cDNAs - Original: J013108G13

    full reading [+] show sequence

    Nucleotide sequence: J013108G13 - full reading 
    GAGCTGGTGG TGGGTGAGGT GAGGGAGCCT CGCGCCGGCT TTGGATTTTT 
    CGTTCTGCCT CGCGACCGAC GATAAAAATC GTGCGTCCGA TGAGGCCCTT 
    CTCCCCTCAT CTCCGGCAAG CCGCGGCGGC GGCGGCTGCT GCGGCCACTG 
    GCGCTCCTCC CCTCGCCGCA GCTCTCCTCA AGAATTCTTC TGCTCCCCTT 
    ATCCATGGCC GGCTCAGCTT CAGCCACACG TCGCTGCAGT CACCGAACAA 
    CCGCGGGAAA CGAACAGGCT GGGCGGTGCG TGTGCTGCCG CTGACGGAGG 
    AGAACGTGGA GATGGTGCTG GACCAGGTGC GGCCGAGCCT GATGGCGGAC 
    GGCGGCAACG TGGCGCTGCA CGAGATCGAC GGCCTCGTCG TCGTGCTCAA 
    GCTGCAGGGC GCCTGCGGCT CGTGCCCCAG CTCCACCATG ACGCTCAAGA 
    TGGGCATCGA GACGCGCCTC CGCGACAAGA TCCCCGAGAT CCTCGCCGTC 
    GAGCAGATCG TCGACACCGA GACCGGCCTC GAGCTCAACC ACGACAACGT 
    CGACAAGGTG CTGGATGAGA TCAGACCATA CCTTTCCGGC ACCGGAGGTG 
    GAAGCCTTGA TCTTGTTCAG ATTGATGAAT CCGTCGTCAA AGTTCGGTTA 
    ACTGGACCTG CAGCGGGTGT AATGACAGTA CGTGTAGCTG TAACACAAAA 
    ACTGAGGGAA AAGATACCAT CCATCCTGGC TGTTCAGTTG ACAGAGTAGA 
    AACATGAGTT CAGTTATGCA GCAACTCAAG AGAAAACAAA ACTTTGATTT 
    TCAGTGATTT TGTGGTATTC AGTCTCAGTC TTGTGGTTTT GAATCAAAAC 
    TGAAGTACTG AACGTCTGAA CCTATCATAC CATCTTTAAA TGCAAGTGTT 
    CTGACTAGG

    Gene models with high sequence identity

    1. AT4G25910.1 [+] show detail - NFU domain protein 3
      E-value: 1e-67; Score: 253.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELA 6.3e-55
    HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 2.8e-24
    HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 1.4e-09
    BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 8e-30
    BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 4e-25

    See the detailed result >

    AT4G25910.1

    Model type
    Protein coding
    Short Description
    NFU domain protein 3
    Curator Summary
    Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast.
    Computational Description
    NFU domain protein 3 (NFU3); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NIFU-like protein 2 (TAIR:AT5G49940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR