K30040

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30040

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30040

Determination of introduced cDNA(s)

  • J013075O08 - Rice Full-length cDNAs - Original: J013075O08

    full reading [+] show sequence

    Nucleotide sequence: J013075O08 - full reading 
    GATGTTTTCT GCCTTCCTAT CTTTCATTCA ATCCTGTGTT TAGGCTGGAG 
    CTATCTCATT CCCACCACGG CACCACCTCT CCAACAACTC ATCTGCGTTT 
    CATCCCATTT TCGAGAAGTT ATTTTGCGTT CATTTCTATG TTCGACACAA 
    ATTTATACGC TTATATTTAA CACCCAAATT CCCAAATCTC GTCCTTTTCA 
    ATTTTCGACA CAATTTTACG TTTATATTTG GCACCCAAAA TTTCAAATCG 
    TGCATTTGTT CATTTTCAAA CAGTGCCAAA ATTAGACCAG ACAAATCACG 
    GCCGCCCCCA ACCTCAGTAC AGTACATAAC CTCAGAAAAG GGAATCAATC 
    AACCCACCCA TCGATAAAAG CCGCCCCAAA ACGGGCAACA CCTCGACGGC 
    GCCATCGCCA CCATCACCCA CCTCCTCTCC TCCCCTTCCC TTCCCCGCGA 
    GCTCCAACGC CCACAAACCC TCACCCTCCC GCAAAAACCC TAATCCCACC 
    TCCTCCTCCT CCCCCCATGG CGGCCAAGGC GGCGGCGCTC TCCTCCTCCC 
    CGTTCGTCTC CTCCCGCCGC CTCTCCTCCC CCGCGGCGTC TCTCCGCGCC 
    CGCACGCCGA GGTGCGTGAT GGGGAGCGAG CAGGTGAGGG TGGTGGTGGA 
    GGAGGAAGGG AAGACGAAGA AGAGGATGGG GGTGGCGGAG CCGAGGAGCG 
    CGCCCCCCGC GGTGTGGACG CCGCGGGCGC CCGCGCAGGA GGCGAGGCTC 
    GCCGCGCTGC GCACCGATGG GCGGGATTCC AGGTTGAAGA TCTTCTCCGG 
    CACGGCCAAT CGCCCCCTCG CGCAGGAAAT TGCTTCTTAC TTGGGTGTAG 
    ACCTGGGTAA GGTCCTCATC AAGCGTTTTG CCGATGGGGA AATCTACGTG 
    CAGCTGCAGG AGAGTGTGAG GGGTTGCGAT GTGTTCTTGG TGCAGCCCAC 
    CTGCTCCCCT GTTAATGAAA ACCTTATGGA GCTTTTTGTC ATGATCGACG 
    CATGTCGGCG GGCGTCGGCG AGGTCTATTA CTGTTGTCAT TCCATACTTT 
    GGGTATGCCA GAGCTGGCAG AAAGGCTCAA GGACGTGAGG CCATTACTGC 
    CAAACTTTCT GCTAATTTAC TTACAGAAGC TGGGAGTGAT CGTGTAATTG 
    TATGTGATAT TCATTCCACT CAAGCATTGG GATACTTCGA TATTCCTGTG 
    GATCATATAC ATGGACAGCC TGTGATTCTG GATTACCTTG CCAGTAAGAC 
    AATATCTAAG GATCTTGTGG TGGTTTCTCC TGATGTGGGT GGTGTTGTCA 
    GAGCACGTGC ATTTGCTAAG AAATTATCTG ATGCCCCTTT AGCTATCGTT 
    GATAAGAGAA GACAGGGTCA CAACATGTCA GAGGTCATGC ACTTAATTGG 
    TGATGTGAAG GGTAAGGTCG CCATCATGGT TGATGATATG ATAGACACAG 
    CAGGAACAAT TACTAGTGCA GCTGCTTTGT TAAAACAGGA GGGAGCAGAG 
    GCTGTCTATG CTTGTAGCAC ACATGCTGTC TTCAGGTTTG GCAGTTGGTT 
    TATTGTAACA TCCATGATCC ATGTAATAGT ATTGATTCAT TGGCTTGTTG 
    CGAAGGAACC ATGTTATGGC ATGATTAGGC AGATTGGCTT TATGTTTGAT 
    CAATATAAAA ATGACAGGGT AGAGCAATAA TTTTACTAGA TTCCACTTGA 
    GCACACCAAT CACTTAGTGC TAGTAAGTGG GAGTCTGGAA AAGAGGTTGG 
    CTTTAATCTA GTTGAGTGCG GATCTGGTTC TTGTTGACTC TATTTCATTA 
    GTAGTCATGA ATCTGTGCCA CACATATCAG CATATGTTTT TCTGGCTATT 
    TTGATTTAGG AAGGGACCTC AAGTCCTCAA TTGAAGTCTT GAATTTTATT 
    AGCATCAACA TGCATGATGT CTTTTTACAT GGTACCGCAC AGTAATTTGA 
    CTTCAAAATA ATAGCAGGAT GTGTTGCCAC TTACTTCATT TGCAAAAATT 
    GTTGTCCTTT TGTATTCCTG CACTATTTTG TAGGCATAAA AGTAAGTCGT 
    TTACCACACC TACTTTTTCC CACTAGCACT GTCTTTGCAG CCCTCCTGCG 
    ATTGAAAGGC TCTCTGGAGG CATCTTTGAG GAAGTTATTG TGACAAACTC 
    CATTCTGCTG CCAGAGCACA AATGCTTCCC CCAGTTGACA GTGCTCTCAA 
    TGGCGAACCT TGTGGCAGAA ACAATCTGGC ATGTTCATCG CGATGGCTCT 
    GTGAGCAGCA TATTTCAATA GCGGCGGATG CTATGGCTAC CGCGATGCCA 
    CATTTGTGTG GTGTGGAGAA GGCACCTGAT GGTTGTGCCC ATCTGCGTAG 
    GAATCAATTT TGGTGACAAG ACTAAATAAG GTTGTAGTGC CGTGTAGGCA 
    TCACACATGT ATCGTGTGAT CAATTTTGTT CTTGCACCCA CTAAATAGTG 
    TTTTCCTGTT AACTCGACGC AGGATATCCA TTGTATCAAG TATAAGAGAA 
    TCAGTCTCGT GCAGTTCTTT CATCCTTTAG CAACTGTTGA GGGACAAGGA 
    AAAGATTTGT GCTGTTCACT GATATATTGG AAGTAATGCA AATGATGCTT 
    AGCTCTGACG AAGAAGTGTT GCCAGTTTTA TGTTG

    Gene models with high sequence identity

    1. AT2G44530.2 [+] show detail - Phosphoribosyltransferase family protein
      E-value: 7e-108; Score: 389.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily PRTase-like 5.2e-53
    superfamily PRTase-like 1.8e-37
    superfamily PRTase-like 3.3e-07
    HMMPfam Phosphoribosyltransferase 4.5e-13
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1,2,3,4 3.9e-160
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 3.9e-160
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1,2,3,4 1.4e-22
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1.4e-22
    PatternScan Phosphoribosyl pyrophosphate synthetase, conserved site 0
    HMMTigr Phosphoribosyl pyrophosphokinase 3.1e-101
    Gene3D no description 1.7e-65
    Gene3D no description 0.00033

    See the detailed result >

    AT2G44530.2

    Model type
    Protein coding
    Short Description
    Phosphoribosyltransferase family protein
    Computational Description
    Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 11359 Blast hits to 11120 proteins in 2784 species: Archae - 259; Bacteria - 6102; Metazoa - 636; Fungi - 683; Plants - 217; Viruses - 13; Other Eukaryotes - 3449 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR