K30133

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30133

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30133

Determination of introduced cDNA(s)

  • J013002C15 - Rice Full-length cDNAs - Original: J013002C15

    full reading [+] show sequence

    Nucleotide sequence: J013002C15 - full reading 
    GTGGAGAGAG ATAGAGTTGG TGAGAAGGAA GGACCGAAGG AGCCGCAGCT 
    CGCACCAGCA CAAGTCAACA GTTGAGCTCC TCCATCCACT TGACTACTCC 
    TACTTGAGAG AGAGAGAGAG ATAGTGCCAT TGCCACTGCA TCCACCATTC 
    AATCTCACAC CTCCGGGCTC CGGCAAGGGA GACAGAGATG CTGCGCCGCC 
    GCGGGCTCCT CCTCGTCTTC GTCGTCGTCT GCTTCGGCGG CGGCGGCTGG 
    CTCCTTCCCG CCTCCCGTGC CATGCCGCTA TGCACGGACT CCAGGCCTCC 
    CGTGGCGCTC AACAAGACGC TCGCCTTCTG CGCCTACGCC CGGGGGAGCA 
    GCAGCTGCTG CGACGCCGCC GCAGACGCTA CTTTGCAGAA ACAGTTCGAT 
    GCCTTCAACG TCTCCGACGC CTCCTGCGCC GCCCTCCTCA AGCCCATCCT 
    CTGCGCGGTA CCCTCCTCCT TTCCCTGCTT TTTACTTTCC TCACCTCACG 
    CTCACAGAGG GCCACGCGAC ACACCTGTTC GCCGCTTTGC CTCACTGGAA 
    TGGATAACCT GCTCCAGATT TGGCTTGCCT TGTCTTTTCC TTTTCAGTTA 
    CTATACTAGT ACTGTATTAT TCATTCATGT CAAAAAAAAA ACAGAGATAC 
    TGATAATCCA CCACTAGTTC AACTTCACTT ACAATTTAAC TGAGCTTCTT 
    TTCTTTCATG TTATCAAGTT GATTCACTGC CATATCAAAT TGCCTCACCA 
    CTAATATCTC ATCTTTCTAA CATGTTACTA CAAAGATACC ACCTTCCGTA 
    ATGTATCATA TAAGAGTGCA GCAATTCTTT CAATTTATTT GAATTTATGT 
    ATCAAATAAA TTGAAGAGAG TATCTGTAAT TGAAGATACC ACCTTCATGT 
    AATTACAGAT ACTTTCTTTA ATTTATGTAT CAAATTTCCC TCTCTTCCAT 
    TTTCAGAAAT GCAATCCGTA TTCTGCTGAG CTGTTCAACG CCGGCCCAAA 
    CATTCGGACT ATCCCTTTCC TGTGCAACTC TACCTCATCC TCTTCTGCTC 
    AATCAAAGGA CTCCACACAA GACTACTGCA AATTAGTCTG GGAAACTTGC 
    AAAGATGTGA CCATATCCAA CTCCCCCTTT CAGCCACCGC TTCAAGGCGG 
    CGCGCCACTT CCCACTTCAT CATCCAAGCT TACTGATGAT TGGCAGTCTG 
    AAGCTGACTT CTACAAATCA TTTGGCGGTG CGCCTAACGA CCAATCTGTT 
    TGCTTCAGCG GGAACTCTGT CTCATTTAAC ACCACTCCAC CTTCGCCCTC 
    TCTGAAAGGG ATATGCCTAG AGAGGATAGG CAACGGATCA TACCTTAACA 
    TGGCTCCTCA CCCTGATGGC TCCAATAGAA TCTTCTTAGG CAGCCAACCT 
    GGGAGGATAT GGTTGGCAAC AGTTCCTGAC CAGGGATCTG GAGGCATCCT 
    GCAGTTTGAT GGGACAAGCC CATTTGCTGA TCTAACCGAT CAGGTGCATT 
    TCGATTCGCA ATTTGGGCTC ATGGGCATGG CATTTCATCC CAATTTTGCA 
    ACCAATGGCC GCTTCTTTGC CTCTTACAAC TGTGATAGGA CAAAGTCACC 
    CAGCTGTTCT GGTAGGTGCT CTTGTAACTC TGATGTCGGC TGTGATCCCT 
    CAAAGGTTGG CACGGATAAT GGCGCTCAAC CATGCCAATA TCAAGTTGTT 
    GTATCAGAAT ATTCCGCTAA AGGTTCTTCA GCAAATATTT CTGAGGTTAC 
    GTCTGCTGAT CCATCCGAAG TCACAAGGAT ATTTACCATG GGGCTGCCTT 
    ATACGTCTCA GCATGGAGGT CAGATCCTCT TTGGGCCTAC TGACGGATAT 
    CTCTACCTCA TGATGGGGGA TGGTGGAGGA AAGGGGGACC CTTTTAATTT 
    CTCTCAGAAC AAAAAGTCGC TTCTGGGAAA AATTATGAGG CTTGATGTTG 
    ATAATCCACC AAGACAGAGT GAAATTGCTA ACCAGAGCTT GTGGGGTAAC 
    TACTCCATTC CAAAAGACAA CCCATACACT GATGACAGTG ACTTAGAACC 
    AGAAGTTTGG GCATTGGGTC TTAGAAACCC ATGGAGATGC AGCTTTGATT 
    CCGCGAGGCC TTCCTACTTC TACTGTGCCG ATGTTGGTCA GGATCAATAC 
    GAAGAAGTAG ATTTGATCTC CAAGGGTGGA AACTATGGAT GGCGTGCATA 
    TGAGGGGCCA CTTGTTTTCA ATCCACCTTC GGCACCTGGA GGGAACACTT 
    CCCTCAATTC CATAAACGCC ATTCCCCCTA TCATGGGCTA CAGCCATTCT 
    GATGTCAACA AGAAGATTGG ATCTGCGTCA ATAATAGGTG GTAATGTTTA 
    TCGAGGATCT ACCGACCCCT GCTTGGTCGG AAGGTACCTA TACGCCGATC 
    TGTATGCATC AGCGATGTGG ACCGGCACAG AGGCTCCAGA GAGCAGCGGG 
    AACTACAGCT CGAGTCTGAT CTCCTTCAGC TGCTCCAAGA GTTCTCCTAT 
    AGCGTGTGAC ACTGCTGCTG GAAGCCCCCT CCCATCACTT GGGTACATAT 
    ACTCGTTTGG CGAGGACAAC AACAAGGACA CCTACGTCCT GTCGAGCAAG 
    GGCGTCTACC GGGTTGTGCG GCCCAGCCTC TGCGGCTACA CCTGTCCAAC 
    AGAGAAACCT GCGACGAACA CTGGGACGAC GACGCCTTCG TCAGCGGCAT 
    CAGTGACAGG CAAGCAGATG ATGGGAGCGC TTCTGCTGTC GGTTCTTATG 
    TTCTGGGTTT TGGTAAGATA GAAACTGCAA AAATAAGCCT CTTGCACTGT 
    TAGCTAGTAC TCCTATATAA GTCATGATTT GAGTCCTGAT GCACCCCTCC 
    TCACTCTTTT TTCCTTTTTC CTTTGTCTGA ACAATCTCAC TGTCTTGATA 
    ACCGTATGTA AATAATCAGT ATTTCAGTTA TGC

    Gene models with high sequence identity

    1. AT1G74790.1 [+] show detail - catalytics
      E-value: 0; Score: 715.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GSDH 8.8e-05
    Gene3D Six-bladed beta-propeller, TolB-like 2.8e-74
    HMMPanther THYROID HORMONE UPREGULATED/GENE 5-RELATED 1.2e-191
    HMMPanther PQQ OXIDOREDUCTASE-RELATED 1.2e-191
    superfamily Soluble quinoprotein glucose/sorbosone dehydrogenase 9.5e-52

    See the detailed result >

    AT1G74790.1

    Model type
    Protein coding
    Short Description
    catalytics
    Computational Description
    catalytics; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Soluble quinoprotein glucose/sorbosone dehydrogenase (InterPro:IPR011041), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: hipl2 protein precursor (TAIR:AT5G62630.1); Has 3691 Blast hits to 3691 proteins in 820 species: Archae - 60; Bacteria - 1937; Metazoa - 139; Fungi - 4; Plants - 281; Viruses - 0; Other Eukaryotes - 1270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR