K30212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30212

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30212

Determination of introduced cDNA(s)

  • J013116N03 - Rice Full-length cDNAs - Original: J013116N03

    full reading [+] show sequence

    Nucleotide sequence: J013116N03 - full reading 
    GACCAGACCA CGCCTCACTC TCGTCGGCTC GTCGCCTTGT CCGCGCGTGC 
    GCCACCGTTT CCACCCAGAT TCGCGCCCGC CACTTCCGAC TAGCTCTTCG 
    CGGCAAAAGA GATCGCCGGC TCGCCGGCCG GCCCGGAGCG CGGGGGTTCC 
    GCTTCCGCGG CGGAGCAGCC GTCGGCTGGG GAGGGGAGAT GGACGCCGGC 
    GAGCTGCCCA TCGTGTACCA CATCGGCATC GTGCTGGCCG CGCTGTGGGC 
    CGCGGGCTCC CTCGGCTTCC GCCACTCCGT CCTCTTCCTC CTCGCCTTCC 
    TCTACCTCTA CATGGTAAAT GCTCGCTGTG CAATGAAATT GCGGAAGAGA 
    ATACAACATG AAGAAATGAA ATCTGCCTAC CAACGAAGAC TGCTATCTGA 
    TGCAGAATCA GTACGCTGGT TAAATTATGC AATAAAAAAG ATGTGGCCTA 
    TCTGTATGGA GAAGATCGTC TCGCAACTTC TACGACCCAT AATACCATGG 
    TTCTTGGATA AGTTCAAACC TTGGACAGTT AGTAAAGCAG GAGTTCAGGA 
    GCTTTATATG GGCAGGAATT CACCACTGTT TACTTCAATG AGAGTTTTAC 
    CTGAGACATC AGATGATGAC CATTTGGTTC TGGAGATAGG GATGAATTTT 
    CTATCTGCTG AAGATATGAG TGCTGTACTT TCTATGCAGC TGCATAAGAG 
    TGTCGGACTT GGAATGACTG CAAACATGCA TCTGACTAGC ATGCATGTTG 
    AGGGAAAGAT TCTAGTCGGT GTGAAGTTTG TCCGGAGTTG GCCATTTCTT 
    GGCCGTGTAA GACTATGTTT TGTGGAGCCT CCTTATTTTC AGATGACTGT 
    AAAGCCACTC ATTGGTCATG GGCTTGATGT CACTGAGTTT CCAGGAATTT 
    CAGGATGGCT GGATAAGTTG ATGGATACTG CATTTGGGCA GACATTAGTT 
    GAGCCCAATA TGCTTGTTAT CGATGTGGAA AAATTTGTAT CGACTCCCTC 
    AGACAATGAC TGGTTCAGCA TTGAGGAGAG ACCTCCTGTT GCATATGTGA 
    AACTTGAGAT TTTAGAAGGA TCCGACATGA AACCATCTGA TATGAATGGG 
    CTCTCCGACC CTTATGTGAA AGGTCGTCTT GGTCCTTTTA AATTCCAAAC 
    TCAGATACAG AAGAAAACAC TATCCCCTAA GTGGTTTGAA GAATTCAAAA 
    TACCCATTAC ATCGTGGGAG TCATTAAATG AACTTGCCAT GGAAGTGTGT 
    GATAAGGACC ACATGTTTGA TGACTCGCTT GGAACATGTA CTATAGATAT 
    CCATGAGCTG AGGGGTGGTC AGAGACATGA CAAATGGATA TCACTCAAGA 
    ATGTCAAGAA AGGAAGGATT CACTTGGCAA TAACAGTTGA AGATATATCA 
    GAGGAGAAGG GGTTGGAAGA ATCATCAAGG AAAGTTGATG CTGAACTACC 
    AATATCAACA TCCGTCAACA AGTTTAATGC TGATGAACTG CCTGATGAAA 
    AGCAAGTCTT AGTAGATGAA GTGGAGCACA TTAACATTGA TGGGCAAGAA 
    CAACCTGGAG GATTATATGT GCATCGCCCT GGCACTGGAG TTCCCAAGAC 
    ATGGGAATCA CGGAAAGGGC GAGCACGTAA TCCTGACACG GAGATTTACA 
    AAGAAGTTGA CAAATCAAAG GATGCGCCTA CCCCAAAAAG CAGTGGACAA 
    GGGGGTTTTT TTGGCTCCTT TTTCCGGAAG AGCTTGAAGA AGGGAAGTTT 
    CCATGATATT GATCCCGGTA TTCCTACAAC GCCAGGGCCT CAGAGTGCAA 
    CAGAGCTTGA TCCGAAGATC CCACAAACTC CACGTCCAAA CCTTAAGGAG 
    GCCGGTGAAA AACGGACATC GATAAAGATA GTAGTCGATG AAGATGCGAA 
    ACCGACAAGG AGTGCGGGAG ATGCAGAGAA CTTGACAGAA GATGTAGCCA 
    AGGTGATGGA GAAAAACGCA GGTGAGCCAG GTAGATCACT GACAAGCATA 
    CTGAGTAGAA AGATTTCCAG GAAGAAACCA GAGGACAAGC TGTCTGATAT 
    CCCAGAGCAG ACTGAAGCTC AAGCATCTGA GTTGGTGAAA GAAGGGCCTG 
    TTCCAGTTGA GGGTAAACCT ATTGATGGTC ATCCGACAAC TGAAAATGGC 
    CATGGAGATG GTGCTTCAGG AGAAGCAGCT GAAACGCAAA CTAGTGCTCA 
    GACTTCACAA TGATTACAAG ATCAGCCGCT GCTGTTGTTG CTGGTAGTTG 
    TAGGTTTGCT TTGTTGTGCT TGTAGAACAA AATTACTTTA GAGATTGTGT 
    TACTTGTAAA ATACAACAAA ACATGATCAT GTTGTAAAGT TACCTGCTCA 
    GGTTTATACA CGTCCATGTA AATCAAAGTT CATACTGTAA TAACTTGTAA 
    GTATGCAAAC ATGACTACAC GAGAGGTTTG AGGGTACCAT TTTCTCATGT 
    TTTCGGTGCC

    Gene models with high sequence identity

    1. AT1G53590.1 [+] show detail - Calcium-dependent lipid-binding (CaLB domain) family protein
      E-value: 4e-166; Score: 582.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily C2 calcium/lipid-binding domain, CaLB 7.5e-30
    ProfileScan C2 membrane targeting protein 12.099
    HMMSmart C2 calcium-dependent membrane targeting 5e-16
    Gene3D no description 5e-24
    HMMPfam C2 calcium-dependent membrane targeting 7.6e-16
    HMMPanther MCTP-RELATED 3.5e-14

    See the detailed result >

    AT1G53590.1

    Model type
    Protein coding
    Short Description
    Calcium-dependent lipid-binding (CaLB domain) family protein
    Computational Description
    NTMC2T6.1; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G14590.2); Has 5916 Blast hits to 4916 proteins in 346 species: Archae - 2; Bacteria - 105; Metazoa - 3154; Fungi - 722; Plants - 1160; Viruses - 7; Other Eukaryotes - 766 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR