K30324

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30324

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30324

Determination of introduced cDNA(s)

  • J023006P21 - Rice Full-length cDNAs - Original: J023006P21

    full reading [+] show sequence

    Nucleotide sequence: J023006P21 - full reading 
    GTCCGGTCGC GAGGTTAAAG GGGAAGAACT GAAGAAGGAA GGGAACCCAT 
    CACCTCATCA AATCTGCCTG TCTTGATTGT GCATTTTGGA CTCTTCGATC 
    CATGTCTGCG TGAAGAATTT TCAGCTTCTA CTCAGTAAGA GATCAAAACG 
    CGATTTAAAA AAACTGGAAT TCCGTCCGCG CAAATCCACG CGTGGATCAG 
    CGAGGATGGT GATGCCAATG CCGACGGAGG GCAGCGAGCC ACTTCTCCCG 
    AGGAAGCAGA GGGACGGCGG TGACGACGGC GCCGCCTCGT CGCACGACCA 
    CTTCGACGGC GCGTCCTTCT CCGGCGCGGT GTTCAACCTG TCCACCACCA 
    TCGTCGGCGC CGGCATCATG GCGCTCCCGG CCACCATGAA GGTGCTCGGC 
    CTCGTGCCGG GCCTCATCCT GGTGATGCTC GCCGCGGTGC TCACGGACGC 
    CTCCATCGAG CTCCTCGTCC GGTTCAGCCG CGCCGTGGGC GCCACCTCGT 
    ACGGCGAGGC CATGGGCGAC GCCTTCGGTG CTTTCGGCAG GGGGCTCCTC 
    CAGCTCTGCG TCGTCGTCAA CAACGTCGGC GTGATGGTCG TCTACATGAT 
    CATCATCGGC GATGTGCTCT CTGGGAAGTC ATCCAGCGGC GGCGTGCACC 
    ATCACGGCGT GATAGAAGGA TGGTTCGGTC CAAACCGGTG GAACGGCCGC 
    TTCTCCATCC TCGTCATCGT CACGCTCGGT GTGTTCACTC CACTGACATG 
    CTTCAAGCGA GTCGATTCAC TGAAATACAC GTCGGCCTTA TCGGTTGCTC 
    TGGCCGTCGT GTTCGTGGTG ATCACTGCCG GAATCACCAC CATCAAGCTG 
    ATGAGAGGGC AGATTCCGAT GCCTAAACTG TTCCCTGATG TTCATGACTG 
    GAGCTCCACC TGGAGACTTT TCACTGCAGC TCCAGTTCTT GTGACCGCCT 
    ACATTTGCCA TTACAACGTG CACCCAATTC ACAACGAGCT CAAGGACCAC 
    TCCCAGATCA GGCCAATAGT GCGGGCGTCG CTGCTGCTCT GCTTGGCCGT 
    GTACACCACC ACCAGCTTCT TCGGCTTCCT CCTCTTCGGC GAGGCAACGC 
    TGGACGACGT GCTCGCAAAC TTCGACTCCG ACCTCGGCAT CCCCTACAGC 
    TTGGTGCTCG ACGACGCCGT CAGGGTCAGC TACGTGCTCC ACCTCATGCT 
    CGTCTTCCCC ATTGTGTTCC ACGCGCTGCG GTTCAACATG GACGGCCTCC 
    TCTTCCCCTC GGCGAGGCCC CTCTCTTCCG ACAACCGGAG GTTCGGCGCG 
    ATCACGGCGG CGCTCCTCAC GGTCATCTTC CTCGCCGCCA ACTTCGTCCC 
    CAACATTTGG GACGCGTTCC AGTTCACTGG CGCCACTGCC GCCGTCGCCA 
    TTGCCTACAT TTTCCCTGCT GGAATGGCAC TGAGGGATCG CCACGGCATA 
    GCGACGAAGG GCGACAAGTA TCTCGCGGTG TTCATGATTG TTCTTGCTTT 
    GGTGGCAAAT GGAGTGGCCG TGTACAGCGA CGCTTGCTTG GGGACGTTTT 
    AGTTGGCGAT CGCACATCTC CGTGGTGATC TGTGCATTAG TTAGTGCGAT 
    ATGAAAAATT CGTTGTTTGC ACGTTGAACT CAACCATTTT GAGTTCCATT 
    TATAATAAGT ACATATGTAC AAATTGCCTG CAGGTTCTGC AGAGATAGGT 
    GTAGATAAGA ATGCAGCGGT GAAAAAAAAA TTCTAAACCG TGAATTTGTA 
    GACCTTTTCT TGTTACTGAC AAATTGGTTG TTCTATACAT GTCCAAACGG 
    TACTGGACAA GAACTGATCA GTTCATGTTG ATTTTGGTGA TAATTAAAGT 
    CACTGGGATT CGATTGGTGT AGTTGGCATT TCTTTTACGT AAGGTAGTCT 
    GCATAATCAG ATATTCAGAT GGTGCTTTCC TGACG

    Gene models with high sequence identity

    1. AT3G30390.2 [+] show detail - Transmembrane amino acid transporter family protein
      E-value: 1e-129; Score: 461.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Amino acid transporter, transmembrane 1.4e-60
    HMMPanther AMINO ACID TRANSPORTER 9.2e-79

    See the detailed result >

    AT3G30390.2

    Model type
    Protein coding
    Short Description
    Transmembrane amino acid transporter family protein
    Curator Summary
    Encodes a putative amino acid transporter.
    Computational Description
    Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G38820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR