K30326

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30326

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30326

Determination of introduced cDNA(s)

  • J033131F13 - Rice Full-length cDNAs - Original: J033131F13

    full reading [+] show sequence

    Nucleotide sequence: J033131F13 - full reading 
    GGGGCTCGCC TCTCGACCTC GGTGTTGCGC TCTCCTCCGC TCGGACCGCT 
    CCTCGCCGGC GATCCCCCCG CCTCCACCGC CGCCGCCGCC GCCGCCGTCG 
    ATCTGCGCTG CCACGGCCGG GGGGGAAGCT TGTGCTGAGG CGCAGTCCTG 
    AAGAGAACCC CACTTGGGAG GCCGGGGGGC GTCGAAGCTC CAAACAACCA 
    AGCACCATCG TGACGAAGCA CGCCACGGGA GATGACTAAG GCGGCGGAGG 
    CGTGGGAGGG CCCGACGGCG GCGGAGCTGA AGGCGGCCGG CGCGGAGGCG 
    ATCCCCGGCG GGGTGCGGGT GAAGGGGTGG GTCATCCGGT CCCACAACGG 
    CCCCATCCTC AACTCCGCCT CGCTCCAGCT CTTTGAAGAT AAACTTCAGA 
    CAACACATTT ACCTGAGATG GTTTTTGGGG AGAGTTTCTT ATCTCTTCAG 
    CATGCTCAAA CTGGCATTAG ATTATATTTC AATGCGCTTG ATGCTCTGAA 
    GGCATGGAAA CATGAAGCAC TACCACCTGT TGAAGTTCCT GCGGCAGCAA 
    AGTGGAAGTT CAGGAGTAAG CCTTCTGATC AAGTAATACT TGATTATGAC 
    TATACATTCA CGACACCGTA CAATGGGAGT GATGCTTTGG TTCAGAACCC 
    AGATAGTATT CAAACAAGTT TGGATGAACC CCGCAATTTG TGTTGGGAGG 
    ATTCTGAGGA TCGGATTGAC CTTGTTGCCC TTTCAGCAAA AGAACCAATT 
    CTTTTCTATG ACGAGGTTAT CCTGTATGAA GATGAGTTAG CCGATAATGG 
    CATTTCATTC CTCACTGTGC GAGTGAGGGT GATGCCAACT GGTTGGTTCC 
    TGCTCTTGCG TTTTTGGCTT AGGGTTGATG GTGTACTTAT GAGATTGAGG 
    GATACCCGGG TGTATTGCTC TTTTGGTAGT GACGAAGCAA AACCCATTGT 
    ACTGCGTGAA TGCTGCTGGA GGGAAGCAAC ATTTGCTAGT CTGTCTGCGA 
    AGGGATACCC TTCCGACTCT GCAGCATATG GAGACCCGAA TCTTATTGCT 
    CATAAGCTTC CAGTTGTGAT GCAGAAGATC CAAAAGCTGA AATTACCCAA 
    TTAACCCGAC AACCCATCTC GTGTACATCA GCGTTTTTTT TTCCATTGAC 
    TGTTGGACGG TGTTCTCTTT CTGCTTATCA TGTGCTGTGG TCTGTGGATG 
    CACGTTCCTG TAGCTGGCAA TAGTATAAAA ATTCTTGTGG TAAAGGCTAT 
    TTGTCTACTG GGGCTTATCA GCTTTT

    Gene models with high sequence identity

    1. AT4G34270.1 [+] show detail - TIP41-like family protein
      E-value: 4e-86; Score: 315.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PUTATIVE CYTOSKELETAL PROTEIN 8.2e-69
    HMMPanther GAF/PUTATIVE CYTOSKELETAL PROTEIN 8.2e-69
    HMMPfam TIP41-like protein 5.9e-67

    See the detailed result >

    AT4G34270.1

    Model type
    Protein coding
    Short Description
    TIP41-like family protein
    Computational Description
    TIP41-like family protein; CONTAINS InterPro DOMAIN/s: TIP41-like protein (InterPro:IPR007303); Has 348 Blast hits to 346 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 127; Plants - 55; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR