K30404

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30404

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30404

Determination of introduced cDNA(s)

  • J023002F22 - Rice Full-length cDNAs - Original: J023002F22

    full reading [+] show sequence

    Nucleotide sequence: J023002F22 - full reading 
    GCTCCGCCTC CGCTTCCGCT CGCCCGGACC CGCCTGCGCC GGCCGCACAA 
    GGGATGCGCT CCCTCACCTC CCGCCACCGG CCGGAACCCT AAGGAGGCGC 
    GTGCCCACCT GCGGCTGCCT CCGGCTTCGG CGATGGGGCG GCCGGGTTAC 
    CTGACGCTGC CAATCCTCTC GGTGCTCGCG GCCATCGGGT ACGTCTACTA 
    CACCACGGTG TTCGTCGCCG TGGCCCGGTG GCTGGGGCTC GCCACGGCGG 
    CCGGGGCCGC GAACGCCGCG GCGATCACCG CCCTCGCCGC CGCCTGCGTC 
    GCCACCTACG CCGTCGCCGT GTGCCGGGAC CCGGGCCGCG TCCCGCCCTC 
    CTTCGCGCCC GACGTCGAGG ACGCCGAGAG CCCCCTCCAC GAGATCAAGC 
    GCAAGGGTGG GGACTTGAGA TATTGCCAGA AATGTGGCCA CTATAAACCC 
    CCTCGTGCAC ACCATTGCCA TGCTTGCAAA AGATGTGTTC TAAAAATGGA 
    CCATCACTGT ATATGGATTA ATAACTGTGT TGGACATGAG AACTACAAAA 
    TATTTTTTAT CTTTGTATTG TATGCTGTAA CTGCATGCTT CTATGCTATG 
    ATTCTTATCA TAGGGAGCGC CATGTACAGT GTTCCTGTAG ATGAACATTC 
    AAGCAATGAT TCTTCTAGGA CATCGATTAT CATTTGTGGG ATCATTCTAT 
    GCCCGCTGAC TTTGGCTTTG ACAGTGCTCT TTGGTTGGCA TATCTACCTC 
    ATATTACAGA ATAAAACTAC AATTGAGTAT CATGAAGGTG TGAGAGCAAT 
    GTGGTTAGCA GAAAAGGGTG GAAATCTTTA TCATCATCCG TATCATCTTG 
    GTGTCTACGA GAATCTTATT TCAGTGCTGG GACCTAACAT ATTCTGCTGG 
    CTTTGTCCAG TATCGACTAA TACGGGAAAT GGCCTCCGTT TCCGTACATC 
    ACATGATATT CCATTATCTA CACCATCGAT GTGATTAACA CGAGATACTG 
    TTATTTATTT ATTCATTAGA TAATCTGTCA AGGTCTTGAA GCTCCTTTAT 
    GAAATGTGCT ATAAGTGTAA CGTACAGGAC CTCCCCACGG CTCCAAGTTA 
    GGACATGGGC TAGGCTGCTC CTTTGTTTTC GTGGTGGTTA TTTTACATAC 
    TTGATGAGGC AGAACATGCT GCCTCGCCTG TAATTTAGTG TAGTCTCTGA 
    TTGCGTTTAT TAGGAGATTT GAATGTAGTC AATTCTGTTG TAGATCTCCC 
    CGGCAGGAAA AAATGGGGGG CTGCTGTAAA TCCAACATCC ATACTTTGTT 
    CTCTTAAAGA GCCACTTATG GCAGCGAAAG GCCACGATAG GAATCATCTG 
    AGATTGTTCG CATACATGTT TATTAAGAAC AGAACTTATA TTTATTTGTC

    Gene models with high sequence identity

    1. AT3G09320.1 [+] show detail - DHHC-type zinc finger family protein
      E-value: 1e-91; Score: 334.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, DHHC-type 28.256
    HMMPfam Zinc finger, DHHC-type 2.1e-25
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 1.2e-50

    See the detailed result >

    AT3G09320.1

    Model type
    Protein coding
    Short Description
    DHHC-type zinc finger family protein
    Computational Description
    DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G04270.1); Has 5137 Blast hits to 5129 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2212; Fungi - 755; Plants - 839; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR