K30634

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30634

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30634

Determination of introduced cDNA(s)

  • J033065B20 - Rice Full-length cDNAs - Original: J033065B20

    full reading [+] show sequence

    Nucleotide sequence: J033065B20 - full reading 
    GATTGCTACT ACTACCACGC AGCGGGTGAC ACACACACAC ACAAAAAGTC 
    ACAAATCTCT ACGTTTTTTT TCCTCGCGAG GCGTAGGGCG CGCATACGCG 
    ACGCGCGCCA TTATTTGGTC CGCCTCGTGC CTCCATAAAT ACCGCCTCCG 
    TCCCGTCCGC CTCCTCCCCC ACACTCCACT CCACTCCACT CTCGCCGCTC 
    GCCGTTGCCA CTCGCACTCA CAATGTCGCC GGCGCCGCGG GTGTTGGTGT 
    TGGTGGTGGC CACAGTGGTG GCGCTGCAGG TGTCGCCGGC GGCGGGGCGG 
    ATCCCGGGGG CGTACGGGGG CGGGGAGTGG CAGAGCGCGC ACGCAACGTT 
    CTACGGGGGC AGCGACGCGT CAGGGACGAT GGGCGGGGCG TGCGGGTACG 
    GGAACCTGTA CAGCCAGGGG TACGGGGTGA ACAACGCGGC GCTGAGCACG 
    GCGCTGTTCA ACTCCGGGCA GAGCTGCGGC GCGTGCTTCG AGATCAAGTG 
    CGTGAACCAG CCCGGGTGGG AGTGGTGCCA CCCGGGGAGC CCCTCCATCC 
    TCATCACCGC CACCAACTTC TGCCCGCCCA ACTACGCCCT CCCCTCCGAC 
    AACGGCGGCT GGTGCAACCC TCCTCGCCCC CACTTCGACC TCGCCATGCC 
    CATGTTCCTC CACATCGCCG AGTACCGCGC CGGCATCGTC CCCGTCTCCT 
    ACCGCCGGGT GCCGTGCAGG AAGAAGGGAG GGGTTCGGTT CACGATAAAC 
    GGGTTCAGGT ACTTCAACCT GGTGCTGATC ACGAACGTGG CCGGGGCCGG 
    GGACATCGTG AGGGCGAGCG TGAAGGGGAC GAGCACCGGG TGGATGCCCA 
    TGTCGCGGAA CTGGGGCCAG AACTGGCAGT CCAACTCCGT CCTCGTCGGC 
    CAGGCGCTCT CGTTCCGCGT CACCGGCAGC GACCGCCGCA CCTCCACATC 
    CTGGAACGCC GCACCCGCCG GATGGCACTT CGGCCAGACC TTCGAGGGCA 
    AGAACTTCCG GGTCTGAATT GAATGAAGCA AAACTGCAAT ATACCCTCTT 
    ATTTACTCAT CTAGTAATTA CTGTCATTAT AGCGAGCAGG TGTGTTTTTT 
    ACCTTGGTTA AGTTTGGGTT CTTCTTCGGT TGGTGGCCTT GTCAAAGTGA 
    GGGGCCGGGG GAAAACAGGT GGTAAAGACT AGTACTAGTG TCAATTAGGG 
    TTAAACTGGT AAATTGCTAG TACTGCTGTT ACTCATCATC ATCATCGCTA 
    GTGGTCACTG CTAGTAGTAG TTGTGCTAGT GCATGTATGG TTATGGATAC 
    TGCATCATGT TGGTTGGTG

    Gene models with high sequence identity

    1. AT2G39700.1 [+] show detail - expansin A4
      E-value: 4e-125; Score: 445.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Barwin-related endoglucanase 9.6e-46
    superfamily Pollen allergen/expansin, C-terminal 1.2e-33
    ProfileScan Expansin 45, endoglucanase-like 29.79
    ProfileScan Pollen allergen/expansin, C-terminal 21.029
    HMMPfam Pollen allergen/expansin, C-terminal 5.9e-26
    HMMPfam Rare lipoprotein A 4.7e-24
    Gene3D Pollen allergen, N-terminal 3.8e-43
    Gene3D Pollen allergen/expansin, C-terminal 6.6e-11
    FPrintScan Expansin 4e-76
    FPrintScan Expansin 4e-76
    FPrintScan Expansin 4e-76
    FPrintScan Expansin 4e-76
    FPrintScan Expansin 4e-76
    FPrintScan Expansin 4e-76
    FPrintScan Expansin 4e-76
    FPrintScan Expansin 4e-76
    FPrintScan Expansin 4e-76
    FPrintScan Expansin/Lol pI 4.3e-51
    FPrintScan Expansin/Lol pI 4.3e-51
    FPrintScan Expansin/Lol pI 4.3e-51
    FPrintScan Expansin/Lol pI 4.3e-51
    FPrintScan Expansin/Lol pI 4.3e-51
    FPrintScan Expansin/Lol pI 4.3e-51
    HMMSmart no description 5.6e-54

    See the detailed result >

    AT2G39700.1

    Model type
    Protein coding
    Short Description
    expansin A4
    Curator Summary
    putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
    Computational Description
    expansin A4 (EXPA4); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A16 (TAIR:AT3G55500.1); Has 2158 Blast hits to 2155 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 41; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR