K30727

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30727

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30727

Determination of introduced cDNA(s)

J013000M18 - Rice Full-length cDNAs - Original: J013000M18

full reading [+] show sequence

GATCATCCTT TCCGATGCCT CGCACCGCCG CCGCCGCCGC CGCCGCGCCG 
CCGCCGCTGC TGCTGCTCTC CGCCGCAGCC GCCATCGCCA TCGCCATCGC 
CGTCGCCGTC GCGGCCCCCG ACGGCCACCT AGTCGCCAGC CTCCCGGGCT 
TCCATGGCGC CTTCCCCTCC AAGCACTACT CCGGGTACGT GACGGTGGAC 
GAGGGGAGCG GGAGGCGGCT GTTCTACTAC CTGGTGACGT CGGAGCGCGA 
CGCGGCGGCC GACCCCGTCG TGCTCTGGCT CAACGGCGGC CCGGGATGCT 
CCAGCCTCGA CGGCTTCGTC TACGAGAACG GCCCCTTCAA TTTCGAGCGT 
GGCAGCGATC CGGGTGGCCT CCCAAATCTG GAGCTCAACC CCTACAGCTG 
GTCCAAGGTT TCCAACGTGG TGTACCTCGA CTCCCCTGCT GGTGTTGGGA 
TGTCGTACTC GTTGAATAAA TCAGATTACA CGACAGGTGA CCTAAAAACA 
GCGGCTGATG CACACACCTT CCTTCTGAAG TGGTTTGAGT TATACCCTGA 
GTTCCAGTCA AATCCGTTCT ACATGTCGGG AGAGTCATTT GCAGGGATCT 
ACATTCCAAC ACTAGCTGAT GAAGTTGTAA AAGGGATAGA AAAGGATCTG 
AAGCCAAGAA TCAATTTTAA GGGATATCTA ATTGGCAATG GAGCAACTGA 
TCAGGACTAT GATTTCAATT CGTTTGTGCC GTTTGCACAT GGGATGGGTC 
TCATCTCAAC CGAATTGTTT GAGGATGCAA GTACTGCATG CCATGGTACA 
TTTTGGGGCA AAGTTAATAA TCTGTGCCAA GAAAAGATAG ACAGAGTGCA 
TTGGGAACTC AAGGACCTGA ACAAGTACAA CATCCTTGCT CCCTGCTACC 
ATCACCCTGA AATTCAAGAA TTAGAGTTCA AGAACAGCAG CTTGCCATCA 
AGTTTTAGAA AGCTAGGTGA GACAGAGAAG CGATTTCCAG TGAGAAAGCG 
AATGGCTGGC CGCTCTTGGC CTCTCCGTGC TCCTGTGACT CGTGGACGCA 
TGACGATGTG GCCTGAACTT GGTGGTAGAT CACTCCCCTG CACGAGCGAC 
GAACTTGCTA ATGCATGGCT GGATGATGAA GATGTAAGAG CTGCCATTCA 
CGCGGAACCG AAAAGCTTAA TTGGGTCATG GGAACTGTAT ACTGCAAGAA 
TAGAGTACTA CCATGATACT GGAGACAGCA TGGTGAAGTA CCACAAGAAG 
TTCACAGCCA TGGGATATCG CGCACTTATT TACAGTGGAG ATCATGATCT 
CTGTATTCCC TATGTCGGAA CGGAAGCATG GGTTAGATCC ATGGGATACC 
GAGTAATTGA TCATTGGCGA CCATGGTACT TTGGAGGGCA AGTCGCTGGA 
TATACACAAG GTTATGAACA CAATCTCACT TTCCTCACCA TAAAGGGAGC 
TGGACACACT GTCCCGGAGT ACAAGCCCAA GGAGACGCTT GCGTTCTATA 
GCCACTGGTT GTCCGGGAAG AAGATTTGAC ATCAAGATCA ACTCGTCGTA 
ACAGTTTTGA GCCTCCGAAT GAAAAAAAAA AGTTGTAATC TGTAATCTCA 
ACAGGCAGAC AAGTGCATTT GTCCGTAATC TGCATCTAGG GATGTGAGCA 
GTCCCAGTAC TACCC

Gene models with high sequence identity

AT4G12910.1 [+] show detail - serine carboxypeptidase-like 20
E-value: 4e-177; Score: 618.00

InterPro Scan Digest

Program	Description	E-value
PatternScan	Peptidase S10, serine carboxypeptidase, active site	0
HMMPfam	Peptidase S10, serine carboxypeptidase	3e-136
superfamily	alpha/beta-Hydrolases	1.2e-131
HMMPanther	SERINE CARBOXYPEPTIDASE I (PLANTS)	3.9e-221
HMMPanther	Peptidase S10, serine carboxypeptidase	3.9e-221
FPrintScan	Peptidase S10, serine carboxypeptidase	1.4e-26
FPrintScan	Peptidase S10, serine carboxypeptidase	1.4e-26
FPrintScan	Peptidase S10, serine carboxypeptidase	1.4e-26
FPrintScan	Peptidase S10, serine carboxypeptidase	1.4e-26
Gene3D	no description	3.3e-130

See the detailed result >

AT4G12910.1

Model type: Protein coding
Short Description: serine carboxypeptidase-like 20
Computational Description: serine carboxypeptidase-like 20 (scpl20); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 21 (TAIR:AT3G25420.1); Has 4118 Blast hits to 3857 proteins in 425 species: Archae - 0; Bacteria - 294; Metazoa - 699; Fungi - 932; Plants - 1620; Viruses - 0; Other Eukaryotes - 573 (source: NCBI BLink).
Link: InterPro Scan - TAIR