K30807

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30807

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30807

Determination of introduced cDNA(s)

  • J013039B05 - Rice Full-length cDNAs - Original: J013039B05

    full reading [+] show sequence

    Nucleotide sequence: J013039B05 - full reading 
    GAGTAGTGGC GCTACCTCTT TCTTCTCTCT ATCTCTCAAC GAGCGCGGCG 
    CGAGCAAGAG GAGCGCGCAC CCCGGCGACA TCAGAGCTCG TCGACGCCGG 
    GGACTCTGCG CGGCGGCTAG GGAGTTCGCC CGCCGGAGCA AGGGCTGGGC 
    GGGACAAAGA GAAGAAATCT GCAGCGAACC CATGGCGATT CTGCCCCTCT 
    CGATTTCCCA CTCTCTTACC TCCGCCTTGT CCGCCACCTC CTCCGGCATC 
    GGCAGGCCAG TTGCCCGCCT CCTCCACCCG CGGGTCCCCT CCCGTCCCAC 
    CGTCATCTGC CTCGCCGCGC CGCCCAAGGT ACCCGTCCCC ATCGCCTCAC 
    CGGCTTCACT AGGGGACGAC CCTTCCAAAT GGGACCCGGC CGAGTGCGAC 
    GCCCTTCTCC GCGGCGGCGA GCAGGTCGCC TCCGTGCTCC AGGAGATGCT 
    CAAGCTGATG GAAGACATGG AGATGGATGG CTCGTTTGAA TCATTGGCTG 
    TGGAGTTGAT CGCTCAAGGA GTCATTGGGA AAAGAGTTGA TGAGATGGAA 
    TCTGGCTTTC TAATGGCACT TGATTACATG ATACAGCTTG CTGAGAAGGA 
    TAGTGACAAT GAGCGTAAAT CTCTCCTTGA GGTAGTCAAG CAGACAGTGC 
    TGGATCATCT CACAAAAAAA TGCCCTCCAC ATGTTCAAGT GGTTGGACTT 
    CTTTGCCAGA CTGAAAAGAA GGATAGCAGA CATGAATTAC TGCGTCGTGT 
    AGCTGCTGGT GGAGGTGTGT TTAAAAATGA TAAAGGCCTT AAGTGCCAGA 
    TTCCAGGGGC CAATCTTAAT GATATTGCAA ACCAGGCAGA TGATCTCTTG 
    GAGTCAATGG AATCAAGGCC CACAATTCCT GATCGAAAAC TTCTCGCTAG 
    ACTAGTTATC GTAAGAGAGG AGGCTCGAAA TATGATGGGA GGTGGCCTGT 
    TAGATGAAAG AAATGACCGT GGTTTCACAA CGCTTCCTGA GGCAGAGGTG 
    AACTTCTTGA GCAAGCTGGT TGCTCTCAAA CCTGGGAAAG CATTGGAGAG 
    GATGATCAAG GATGTTATGC AGGGCAAGGC AGAAGGTGCT GATAACATTG 
    AAAATGCAAA TGCTGGACCA GATTCTAAGC TTAATCATCT AACTGGGATA 
    TCTGGAAGGG GAAGTGTGAC AGGCCTCAAG CCACGGCCAG TCCGTCCAGG 
    AATGTTCCTT GAGACGGTTT CTAAGGTGGT ATATATGCAA ACAACACATC 
    TGGCATTACA GCACAACATC TAGAATGGGT ACATCAAACA ACACTGAAGA 
    TTCTTCAGGA AATGGCCTTC TAATGCTGTT TTCTGGACGA CATTCACTGC 
    CCTGTTCAAG TATATGAACT CCCTAGATTC TTGGCCCTTT TAAGCTTATG 
    ATATTACAGC CTAGTGGGCA AAAGGATCAT GGTATGGACC TTAGTCTTGC 
    TGCAAAAACT TATTGATTTT TTTTTACCAG TGAATGGCAA ATCTTGGAGG 
    AACTTGAGTG GCCATTACTA ATATAGTTAA AAATAGAAGC AGAAGAAATG 
    ATGTCTGGGC ATGCAAAGGC CAATGGTGAT CTCTGGGTGG AATGTAATAT 
    TTATACCACA TTTAGTGCAG AAGTAAAGTA AGAGCTTCGA AAAGCAAATA 
    GTCAAATGGA CACAGTGATA TTTAGCTTAG CTTCCTACAA TGGATATTAA 
    GAGAGTTTAG CTTACTTTTG AGTGAAATAG AAGATGGCCT TAGATCTAAC 
    ATGATATGTA TCGCCCTTTT CCATTTTGCA GGATTTTCTT TGTCTCAAAA 
    TATATTTTCA AATTTTATAT TGCTGGAAGC CAGGGATACT TTTTACCAGT 
    AAATGTTTTT GGTTTTCCAA ACGAGAATAT GATCTTGTGA TGAATCGATT 
    CTATGTTTTG CTT

    Gene models with high sequence identity

    1. AT5G48470.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 1e-122; Score: 53.90

     

    InterPro Scan Digest

    See the detailed result >

    AT5G48470.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR