K30809

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30809

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Original: K30809

Determination of introduced cDNA(s)

  • J033115I17 - Rice Full-length cDNAs - Original: J033115I17

    full reading [+] show sequence

    Nucleotide sequence: J033115I17 - full reading 
    GACCAGTCTT GCATCTCTGA CTATATATAC ACATACATGT AGCATCCTGC 
    TCCATCTTAA CTAGCTACTA CTAGTGATGA GCAGAATCAA CCTCATGCAG 
    TAATATGCTG TGCTGATCGA ATTAATTTAC ACATATATAG ATAGATAGAT 
    AGATAGATCG TTCGACCAAT CGAGCTAGCT TGAGCAAACT GATTGACCTG 
    GTGAAGTGGT ATAATTAACG AGCAGATCAT GGAGGATTGC AGCAGCTGGA 
    TCCATGGCTA CGCCAACGCT AACGCCACCG CCGGCAACAA CGGCTTCATG 
    TGCGGCTACG CTGCCAGCTG CAGCCCAGTA GAGTTTCAGC AGCAGCAACA 
    GCTGGTCGGC TCGCAGATTG AGCACCACCT CAACCAGATC AGCATGCAGA 
    TGGGGATGGA TGACGAGTCG GCGGTGTACG ACGGCGCCTC CATGGTGGAC 
    GTCCTCCTCA TGGCTTCCTC GTCGCCGCAC CACCACGCCG GCGCCGGCAG 
    CTTCCAGTAC TCCTCGCCGA CGTCCTCCTC CGCCTCCTTC CGCTCCGCCT 
    CCGTCTCGTG CAGCCCTGAG AGCTCGGCGG CGGCGACGAC GCACTTCCTC 
    GGACCGCCGG CGCCGTCCGC GGCGGCGGCG GGGTTCCATT ACCCGGAGGT 
    CTCCTCGCAG GCGCCGTTGC CACTACCCTT GCCGCCCTAC GAGCCGCAGC 
    ACGGCCAATA CACCACCGTC CTCTCGCCGC CGCCGCCGGC GCCAGAGTTG 
    CCGGCGACTA CTACGCCGGC GACCGGCGGC GCGTTCAGGC GGTACGCGCG 
    GCACCTCCGC CCGAGGAGGC TGCCCAAGCC GGGAGGGTGC GGGCAGAGGA 
    TGTTCAAGAC GGCCATGTCG GTGCTCACCA AGATGCACGT GGCGGCGACG 
    TACAACCGCC AGTACTACTA CCAGCAGGCG GCAGCCGCCG CCGCGTCGGC 
    GTCGGCGGCC GAGGCGCCGC CGTCCGGCAA CCAGCTGCAG CACATGATCT 
    CGGAGCGGAA GCGGCGGGAG AAGCTCAACG ACAGCTTCCT CGCCCTCAAG 
    GCCGTCCTCC CTCCCGGCTC TAAGAAAGAC AAGACATCGA TACTGATCAG 
    AGCAAGAGAG TACGTAAAAT CTCTCGAGTC AAAGCTGTCA GAGCTGGAGG 
    AGAAGAACCG GGAGCTAGAG GCGAGGCTAG CCAGCCGCCC CGCCGCCGCC 
    GCCAAGAACG ACAAAGGCGA GACGGCGGCG GCGCCAGCGC CGGAAGCCGG 
    CGATGAGACG AAGCGAAAGG ACCTAGTAGA GATCGAGGTG ACGACGAGCG 
    GCGGCGGCGC CGGAGCGGCG GATGCGGCGG CGGCGGCGGG AGGAGATCAA 
    GAGACCTGCA CGCTCAACGT AGACTTGCGC GGCGGCGGAG GCGGCGGAGG 
    CATGAGCACG ACGGACGTTG TGCTCCGGAC GCTGCAGTGC CTGAGAGAGC 
    AGATCGGCGA CGGCGCCAGC CTCGTGGCGA TGAGCACCAG CGCCGGCTCC 
    GGCGGCCGCC CGCCTCGTGC AAACCTAACA TTACAGCTCA AGGTGTAATT 
    AATTAATAAA AAAGCATTCT ACTAAAGAAG TTAAAGGAAA AATCTGTCTC 
    ACATCTCAGT GATCAGAAAA AAAAAAGAAG AAAAAGGGAG GTGCCATCAG 
    TGCAAAATAG CATGCATGCA TGCAAGCACA TTGTTGACAG CATGATTGTA 
    CATTTTTCTC TCTTAAGATA ATGGAAAACC TTACACATAT TTCATACTAG 
    C

    Gene models with high sequence identity

    1. AT5G56960.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding family protein
      E-value: 4e-13; Score: 73.60

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Helix-loop-helix DNA-binding domain 5.2e-12
    Gene3D Helix-loop-helix DNA-binding 1.4e-08
    HMMPfam Helix-loop-helix DNA-binding domain 1.5e-09
    superfamily Helix-loop-helix DNA-binding 6.4e-16
    ProfileScan Helix-loop-helix DNA-binding domain 11.618
    Coil coiled-coil 0
    HMMPanther CENTROMERE-BINDING PROTEIN 1, CBP-1 3.8e-06
    HMMPanther STEROL REGULATORY ELEMENT-BINDING PROTEIN 3.8e-06

    See the detailed result >

    AT5G56960.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding family protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G57150.4); Has 2180 Blast hits to 2174 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 44; Plants - 1927; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR