K30907

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30907

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30907

Determination of introduced cDNA(s)

  • J033116D16 - Rice Full-length cDNAs - Original: J033116D16

    full reading [+] show sequence

    Nucleotide sequence: J033116D16 - full reading 
    GAGAAGGAAG TCCCGGAGGG TGCCCCTGAC TGTTTAACTG GTTTGACATT 
    TGTCATAAGT GGCACTCTTG ACAGTCTTGA ACGTGAGGAG GCAACTGATC 
    TAATCAAGCG TTATGGAGGC CGTGTGACCG GCTCTATTAG CAAAAAGACG 
    AATTACCTAT TGGCTGATGA AGACGTTGGT GGAGTGAAAT CAAATAAAGC 
    GAAAGAACTG GGCGTCCCAT TCCTAACTGA AGATGGTTTA TTTGATATGA 
    TTCGGAAATC AAAGCCTGCA AAGGCTACTG TGGCAAAACA TCAAAGCGAC 
    AAAAATTCAG AAAAGCAGCA AAAATCACCA ATGAAGAGTT CTCCAGTTAA 
    AGTTGAAAGA AGAGATGGTA ATCAAATTAC CACAGGCAAA AATATTTCAC 
    CAAAGAGTAA TAAAGGAAGT GCCTCCATTG ACAACCAAAA GGTCAACATT 
    GTTGACCGTG GTTCTTTGCA ATGGACTGAA AAGTATCGGC CCAAAGTTCC 
    AAATGACATA GTTGGGAACC AATCAATGGT TAAACAGCTT CATGATTGGT 
    TGAGAAGTTG GGAGGACCAA TTCCTTCATT CTGGCCAGAA GGGTAAGGGA 
    AAGAAGCAGG CTGATAGTGG AGCTAAAAAG GCTGTGTTGT TGAGTGGACC 
    TCCAGGTATT GGTAAGACCA CAACTGCTAA AGTTGTCAGT CAGATGCTTG 
    GATTGCAGGC TATTGAGGTT AATGCAAGTG ATAGCCGTGG TAAGGCAGAC 
    TCTAAGATTG AGAAAGGTGT TGGGGGCAGT ACATCAAATT CTATCAAAGA 
    GCTTATTAGT AATGCAACTC TGAATTATAG TAACAACCGA TTAAAACGAC 
    CCAAGGCTGT ACTAGTCATG GATGAAGTTG ATGGTATGTC TGCTGGAGAT 
    CGTGGTGGTG TTGCTGATCT TATTGCTAGC ATTAAGATGT CCAAGATTCC 
    TATAATTTGC ATTTGCAATG ACCGTTATAG CCAGAAATTG AAGAGCCTTG 
    TAAATTACTG CTTGCTACTC AACTTCAGAA AACCAACCAA GCAACAGATG 
    GGTAAGAGGT TGATGGAAAT TGCCAAGAAG GAAGGTCTTC AAGCTCAAGA 
    GAATGCAATG GAAGAACTTG CAGAAAGAGT ACACGGGGAT ATTCGCATGG 
    CTCTTAACCA TTTGCAATAT ATGAGCCTCT CCCAGTCCGT GGTCAAATAT 
    GATGATATAA GACAGCGACT TAATAGTAGC ACAAAAGATG AAGATATTTC 
    CCCCTTCACG GCTGTTGACA AGCTGTTTGG TTTTAATGGT GGGAGACTAC 
    GGATGGATGA GAGAATTGAT TTGAGCATGA GCGATCCTGA TTTAGTCCCT 
    CTGATTATCC AGGAAAACTA TATCAATTAT CGGCCTATCA CTGTTGGGAA 
    GGATGACAGT GGAGTTAAAA GAATGAATTT TCTTGCTCGT GCTGCTGAAT 
    CTATAGCGGA CGCTGATATT GTTAATGTAC AAATAAGAAG ATATCGACAG 
    TGGCAATTGT CCCAAGCTGC TTGTTTGTCT TCATCTATAG TTCCTGCTGC 
    TTTGATGCAT GGGAATAGAG AGATCCTTGA AGCAGGTGAG CGAAACTTCA 
    ATAGGTTTGG TGGATGGTTG GGAAAGTACT CGACCACAAA TAAAAACATA 
    AGGCTACTGG AAGATGCCCA TAGTCATATT CTTGCCTCCC AGCAAGCAAA 
    TTTGGACAGG GAGTCATTGA GGCTGGATTA CCTCACTCTT CTCTTGAGAC 
    AATTGACTGA TCCACTGAAG ACAATGCCCA AGGATGAAGC TGTGCAAAAA 
    GTGGTGGAGT TTATGGATAC CTACTCTTTA AGCCAGGAAG ACTTTGACAC 
    AATTGTTGAA TTATCAAAAT TTAAGGGTCA TCCAAATCCT ATGGATGGTA 
    TTCAACCAGC TGTTAAAAGC GCCTTAACAA AAGCATACAA ACAAGGAAGT 
    AGTTCTCGTG TTGTTCGAGC AGCAGATCTA GTAAATATCC CAGGCATGAA 
    AAAGCCATTA AAGAAACGAG TGGCAGCAAT CCTTGAGCCA GTGGGAGAGA 
    GTTTGCCTGA AGAAAATGGA GTAGCGTCAT CTGAAGGCGA TGAAGAGGAT 
    TCCTCTGATG CTGAAAATAA TGATGAACTG GTGCCTGGTG ACACAAAACC 
    AAAACTGGAC CTGCAGAGTG ATAAGAAGAA AGGGATCCAA GTGCAGCTCG 
    ACCTGAAGAG CAATGGCAAT GGCTTGAACT CGAAGAAGAT GCCGGCTGGT 
    AGATCAAAAG CTTCTGGCTC TGCTGGGAAG GCTGCTGGAG GCTCAGGTGG 
    GAAGAGGAAG AGGTAAACGT CCGCCGGCCG CCGTCATTTA GTCGGTGGTG 
    AATCTACATG AACATCCTCT GATATTCTGG GGCAGAATGC GGTTCAAATT 
    TTCTTGCTTG TACATAAGTC CCAATCATCT TTGTAGGCAG TAGTAGGCAA 
    TTGGTATCTG CTCCAGATAT TTTGTTTCCT CCCACTTGTA TGAGCTTCAT 
    TTCGCTCTAC TGGCATTTGG CCAGTTTTCA GCTTTGCAAG ACAACGTCCA 
    TTATTGTTGA CTTCCGTTCA ATGAAATTGT GTCATGTTTG TTGCC

    Gene models with high sequence identity

    1. AT5G22010.1 [+] show detail - replication factor C1
      E-value: 0; Score: 923.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.9e-22
    Gene3D no description 2.5e-28
    Gene3D no description 1.4e-08
    ProfileScan BRCT 16.483
    HMMPanther CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 9.9e-41
    HMMPIR DNA replication factor C, large subunit 0
    HMMSmart BRCT 1.9e-15
    HMMSmart ATPase, AAA+ type, core 5.3e-08
    superfamily DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal 1.4e-43
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-42
    superfamily BRCT 1.8e-20
    HMMPfam DNA replication factor RFC1, C-terminal 4.1e-48
    HMMPfam BRCT 1.4e-15
    HMMPfam ATPase, AAA-type, core 2e-13

    See the detailed result >

    AT5G22010.1

    Model type
    Protein coding
    Short Description
    replication factor C1
    Computational Description
    replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR