K30909

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30909

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30909

Determination of introduced cDNA(s)

  • J033065H17 - Rice Full-length cDNAs - Original: J033065H17

    full reading [+] show sequence

    Nucleotide sequence: J033065H17 - full reading 
    GACACTGCCC TGCCCTATCG CAATTTCCAT TTCCATCTCT CCTCCTCTCC 
    TCCTCCACCT CGTCCTACAA ATGCGGCGCA GGACGAGAGT CAGAGCGGAG 
    TAGTAGCAGA CGAACACGAC GACATCGGAG CGCTCTTGTC TCCTCCTCGT 
    TTCTTCTGCT CCCGAGTCAA GCAGATCCTC CAAGCCCAGC GAGGGGGCGG 
    GCGCGCCGCC GCTGCCGTTG TTGTTGTCGG CCGCAGCGCA GACATGGACC 
    CGTCCGGCGG CGGCGGCGGA GTCGGAGTCG GAGGCATCGG CGGCGGTGAA 
    CAAATTCTTT GGGACTGGCA AGCGGCGGAG CAGTGCGAGA GCAATGCTGC 
    AAATCATGAT GTTTCTAGAT TCATGTGGGA CTGCCTCAAT CAAGATGATG 
    ATGACCTACT GGGATTGCTG GGCAATCAAA CTCCTCTAAG AGATTGTCGC 
    GGCTTCTTTG ATATTGATGA TTTCACCTGC AAGGAGACGT TGGACCTAGA 
    GGAATCTCGG GAATCAAAGC GCCGCCGCAT ATTGGAGTAC CCTTCTGAGT 
    CTAATCAATC AGAAGATGGA AATCGTGAAA TAAGTTCTAC CTTGGGCACA 
    TCTGAGGTAT CAGAAATTTC ATTGCTTTGC ACCGATGAAC CGCAGAGCTT 
    CAATTGGGAT TCACAGAACA ATTCAAATAA TTTTGGTTTG TCTTTTGTTT 
    TTCATATTAT ATTGTTTGAC AACTTAAATT GCTATGCCTT TTTTGTTAGC 
    TAACTGAAAA TAGTGGCATC TGATACAATA GATTCTTTGT CAACTGGAGC 
    ATTCTACCAA CCATCAAATA GTCATTCGAA AAATTGCTCT GATGAAAATC 
    AAATGCATTT CAGGCATGAC CAAATGTTAG CTACTCTCTG TTCCCACAGA 
    AAACAGTATT TACTTTATCA TTATATTTCA ATGATGACAT GTTAAGCTTG 
    GATTCATTTT TAGGCATTCT AGCCAGGAGA GCGTTACATA TACCAATGAT 
    CAAAGTGGTA TTTCAGGAAC AACTGAGAAT GATTCAGTGA CAGAAAGTCT 
    TCTAATGCAG GAGACTAGGA AGCTTTCTAC ACTTAAAGTA TCTAAAGGAA 
    CCTCACTGGT TAAGGCGAAG CAGAATTTAA CTACAACTAT AGCATACCCT 
    TTTACCCTCA TCAAACCATC CTGGGAGGAA GGAGATGTCA TCACTCTAAA 
    GGATATAAAT CAGCGAATCC GTGCTCCTCC GAAGAAGGCT CCAGAAACCC 
    TAGGGACTTC AGCCTTCTCT GGCAAGCCAG TCATTGGCAA GACAAGGATC 
    AGAACTGACG GGGGCAGAGG CAGCATCACG ATACTAAGAA CAAAAGGTTG 
    AGAGTCCAAA CAACAAGTTT CTCAGCCATT ACCTGGATTG CTTTCAGCAA 
    TTTGATCTCC ACAGCTCTCC AGTTTTTTTT TTTTTTTTTT GGCCATGGAT 
    TTGGTATTTA GGATGACTAT CAATGGCTAA CTCTTCAAAG ATTTACCATT 
    CATCCTGTGT ACATTAGCGG CATGCGGCTA ATGTTAAATA TATGAGAGTT 
    TTGTGTTCAG AAACCATGTC CCTCTACTCA TCTAACTTAT GTTGGATGTT 
    GTTCAGGGTT TTCTCCCATT TTTCTGAATA GTTGTCCATT CTCAAATGGA 
    CGCGTGTAAT CGGGAAACAT TTGATTATTT TGTTGCTTAC AATATATAGC 
    ACAGATACAG GTGAGTTTAT

    Gene models with high sequence identity

    1. AT5G48720.2 [+] show detail - x-ray induced transcript 1
      E-value: 3e-18; Score: 90.50

     

    InterPro Scan Digest

    See the detailed result >

    AT5G48720.2

    Model type
    Protein coding
    Short Description
    x-ray induced transcript 1
    Curator Summary
    Encodes XRI1 (X-ray induced 1). Required for post-meiotic stages of pollen development and male and female meiosis. Maybe required for meiotic DNA repair. Inducible by X-ray. Homozygous xri1 mutants are sterile due to extensive chromosome fragmentation.
    Computational Description
    X-RAY INDUCED TRANSCRIPT 1 (XRI1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA repair, female meiosis, response to X-ray, pollen development, male meiosis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01990.1); Has 123 Blast hits to 123 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR