K31042

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31042

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31042

Determination of introduced cDNA(s)

  • J023004O07 - Rice Full-length cDNAs - Original: J023004O07

    full reading [+] show sequence

    Nucleotide sequence: J023004O07 - full reading 
    GGGCGCACCG GAAAGGCGAG AGGAGGGAGG AAGGCTGCAA GCCCTAGCGC 
    CAGGGCGAAG CAACCGGATG TCCGGGCGCG CGCGCGCGTG GGTGCATTGC 
    GCGATCCCTT CACGCTGCGG CAAGCCAGAG GCGACCGGGC CGCCGCGCGC 
    GCGTCTTCAC CTTCTTCCCG GGCGCCGATC CATGGCGGAG CGGCGGTGGT 
    AGAAGGGTTT CGCGAGCGGG CGTGGATCCG GGGGCGGGGG CGGCGGTGGC 
    ATGGCGCTCT TCCGCAAGTT CTTCTACCGG AAGCCGCCCG ATGGCCTCCT 
    GGAGATCACC GAGCGCGTCT ACGTATTTGA TTCTTGCTTC ACTACGGATG 
    TCTTTAACGA TGATAAGTAC CAAGACTACA TTGGGGACAT TGTCGCTCAA 
    CTTCAATGCC ACTTTGCTGA TGCCTCATTT ATGGTGTTCA ACTTTCGAGA 
    GGGAGAAAGT CAAAGTTTGC TGGCAAATAT CTTATCGAGC TATGAGATGG 
    TAGTGATGGA TTATCCAAGA CAATATGAGG GATGTCCACT TGTTACCATT 
    GAGATGATTC ACCATTTCTT GAGGTCAGGG GAGAGCTGGC TGTCTTTGAG 
    CCAGCAGAAT GTGTTGATAA TGCACTGTGA GCGAGGTGGC TGGGCTGTAC 
    TTGCATTCAT GTTGGCAGGG CTACTGTTGT ATAGAAAACA GTACATTGGT 
    GAACAGAGGA CACTGGAGAT GATCTACAGG CAAGCACCTC GTGAGCTGAT 
    TCAGTTGCTC TCACCACTAA ATCCTATACC CTCTCAGATA CGATACTTAC 
    ATTATATATC TCGGAGGAAT GTGAGCGCAG TGTGGCCACC AGGTGATCGG 
    GCACTTACCT TGGATTGTGT AATACTAAGA AATATTCCAG GTTTCAATGG 
    GGAGGGTGGA TGTAGACCGA TATTCCGTAT TTACGGAAAA GATCCTCTAC 
    TTGCTACAAG TAACACCCCC AAGGTGCTTT TCTCAACACC AAAGAGGAGC 
    AAATATGTTC GGCTTTACAA GAAGGTAGAC TGCGAATTAA TTAAAATTGA 
    CATTCACTGC CATATTCAAG GTGATGTTGT CCTTGAATGC ATTAGCCTTG 
    ATGCGGATCA ACTTCCAGTT CTAGTAGTTG TCATTGTCTC CCTCCAGATT 
    CCATGCTTTC CACCACAACA GCTTTGTTCA GACCTCCAGC ACCGCCGCCA 
    CCACCACTTC AATCTCCATC CACTCCTAGA TGCTCTCCTG TTAGAACTCT 
    TGCATCACCT CCACCTCCTC CTGCCCCTAC TTCATCGCCT GTTAGAATGT 
    CAGGGCCTCC TCCCCCACCT CCTCCACCTG CACCAAACTC GTGTCCCAGT 
    AGACCTGCAC CACCTCCACC TCCACCTCCA CCACTTGCTT CAACTTCATC 
    TCCTCCCCGA CCTGCCGCAC CATCACCGTG TCAACTACAT ACTTCAACTT 
    CATCTCCTGC ACGACCAGTT CCACCACCTC CACCAACATT ATCTACAATT 
    AGATCTTCAG CGCCAACACC ACCTCTACTG CCTGGAGCTA CTTCTGCACC 
    ATCCCCACCA CCACCACCAC CCCCCTGTAG TTCATCAAAT CAACTGTCTG 
    CTCCGCCACC GCCTCCTCCA AGCTTCTCAA AGAACAATGG CAGTATTGCG 
    CCTCCGCCAG CACCTCCTGG TGGTAATGCT AAATTGCCTG GTATGAGGGG 
    GCGTGGACCT GCACCTCCTT CAGGTCCAAT GTCTAGGAGC CTTCAATCTG 
    GTCAGGCTGC ATCCAGAAGG TCCAACTTGA AGCCCCTACA CTGGGTTAAA 
    GTAACAAGAG CAATGCAGGG AAGTCTCTGG GAGGAGTCAC AGAAAACTGA 
    CGAAGCTTCA AAACCTCCAG TGTTTGACAT GTCAGAACTA GAACATCTTT 
    TCTCAGCTGT CCTGCCAAGT TCAGATGGGA AGCGTTCAGA TAAGTCAGGA 
    AGTCGTGCAT CTGGATCAAA ACCAGAAAAG ATTCACCTTA TTGACCTTCG 
    CCGAGCTAAT AATTGCGGAA TCATGCTAAC AAAAGTCAAA ATGCCCTTGC 
    CTGACCTAAT GAGCGCAATT CTTACTTTGG ATGATACTAT CCTAGATGCT 
    GATCAGGTGG AAAACCTTAT TAAGTTCACT CCAACTAAAG AGGAAGCAGA 
    ACTTCTGAAG GGTTACAAAG GAGATAAGCA AGTACTTGGA GAATGTGAGC 
    AGTTCTTCAT GGAGCTTATG AAATTACCCC GTGTGGATTC TAAGCTGAGA 
    GTTTTCTTAT TTAAGATTCA ATTCCCTTCT CAGGTTTCTG ACCTTAAGAG 
    GAGCCTGAAC ATTGTCAACT CTTCCGCGGA AGAGATAAGG GGTTCAGCTA 
    AGCTGAAAAG GATTATGCAG ACAATTCTTT CACTGGGAAA TGCGTTAAAC 
    CAAGGAACTG CTAGAGGTTC TGCTGTTGGG TTCAGGTTGG ATAGCTTACT 
    CAAACTAAGT GACACTCGTG CACGTAACAA TAAGATGACT TTAATGCATT 
    ATTTATCCAA GGTGCTTTCT GAGAAACTTC CAGAACTTCT TGATTTTCCT 
    AAAGATCTCG CTAGCTTGGA GTTGGCAGCA AAGGTACAAT TGAAGTCATT 
    AGCAGAGGAA ATGCAGGCCA TAAACAAAGG ACTCGAAAAA GTCGAGCAAG 
    AACTAACTAC ATCAGAAAAT GATGGCCCTG TGTCAGAGAT ATTCCGCAAG 
    ACACTGAAGG ATTTTCTAAG TGGTGCTGAA GCTGAAGTTA GATCCTTGAC 
    CTCACTATAT TCTAATGTGG GAAGAAATGC TGATGCATTA GCACTTTATT 
    TTGGAGAAGA CCCAGCACGT TGTCCATTTG AGCAAGTGGT CATTACACTC 
    CAAAACTTTG TGAGATTGTT CGTACGTTCC CATGATGAGA ACTGCAAACA 
    ATTGGATCTA GAAAAGAAGA AAGCACTGAA GGAAGCAGAA GCAGAGAAAA 
    CCAAGAAGGA GCCAGAAAAC GCACAGAAAA CTAAGGAACC AGGAAATGAC 
    AAAGCTAAGC ACAACAATTC AATCAAAGAG TTGGGTATCT CACTCCAATC 
    ACCAGCGCAA ACTGCCAGTG CCAAATGATA TAACTTCTCT TGACAGATGA 
    GCCAAACAAC ACTAGCTTTG CCAATAAAGG AAACCTGTTC ATGGTGCCTG 
    CTCCTATCAG TCACCCTCTC TAGCTGATGT CAGCTGGATA TGTTGCGCTG 
    GATGATGGAT TGAAGTGAAC CAGCTGTGGC AAGAAAGTCG CAAAGTGAAT 
    GGCCCATTCA GCATTCTGTC CTCTGCAGTT ATTCATCTAA CAGAGCGATT 
    GATACTTAAG AAATGTTCCT GGAGACAAGC TGTACAGTTC TAACAAAATA 
    ATAGAAATGA TCAGAAGCAC ATTTACAATT TTGTTTATTT GTTCCAATCA 
    TATGTAGGTA ATGTTCGTTC TAACAGAAGA ATAAAATTTA TCAGTAGAAT 
    CGTGTTTAGG GGGACTAGCC TGTAGGTTTT GTTGTAAAAG GAAAAAACAA 
    ATAATGGCTG ATTGTATTGT

    Gene models with high sequence identity

    1. AT2G25050.1 [+] show detail - Actin-binding FH2 (Formin Homology) protein
      E-value: 5e-147; Score: 519.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Actin-binding FH2 3.7e-110
    HMMPfam Tensin phosphatase, C2 domain 2.1e-09
    ProfileScan Actin-binding FH2 71.046
    ProfileScan Tensin phosphatase, C2 domain 15.592
    Gene3D no description 8.8e-06
    HMMPanther FORMIN-RELATED 1.4e-200
    HMMPanther FORMIN-RELATED 1.4e-200
    HMMPanther FORMIN-RELATED 2.8e-114
    HMMPanther FORMIN-RELATED 2.8e-114
    Coil coiled-coil 0
    Coil coiled-coil 0
    superfamily Actin-binding FH2 1.1e-110
    superfamily (Phosphotyrosine protein) phosphatases II 2.2e-09
    superfamily C2 calcium/lipid-binding domain, CaLB 2.3e-07
    HMMSmart Actin-binding FH2/DRF autoregulatory 2.1e-66

    See the detailed result >

    AT2G25050.1

    Model type
    Protein coding
    Short Description
    Actin-binding FH2 (Formin Homology) protein
    Computational Description
    Actin-binding FH2 (Formin Homology) protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Actin-binding FH2 (InterPro:IPR015425), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: Actin-binding FH2/DRF autoregulatory protein (TAIR:AT3G32400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR