K31150

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31150

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31150

Determination of introduced cDNA(s)

  • J033125O22 - Rice Full-length cDNAs - Original: J033125O22

    full reading [+] show sequence

    Nucleotide sequence: J033125O22 - full reading 
    GCCTCCAAAC CCTCGCGGGA GATCGGAATT CCCCACCCCG GAGCGCCGGA 
    TCCACCACCG ATCGTCGGCG GCGGCGGCGG AGGAGGCTGC GACGGCGGAG 
    GCGGAGATGC TGGGCCCTCC TCGCCGCGGG CCGGCGTACA AGACGAAGCT 
    GTGCGCGCTG TGGCAGCGCG GCAACTGCAA CCGCGACACC TGCAGCTTCG 
    CCCACGGCCA CGGCGACATC CGCCGCCCGC CGTCCTCCCG CGGCGCCTTC 
    ACGCACCACC CGGGGAGAAG AGATTATAGA GCCGGTGATT TCAGAGGCAG 
    GATTGATAGG AGGTTTTCAC CTCGGAGGAG GCATTCCCCT GGAAGAGAGT 
    CCAGGGGTCA TCGTCCCCTT TATGATAGAA GGCCATCTTC TCGAGAAAGA 
    GATTCTAGCT ATTCACGATC TCCTAGCAGG AAGAGTGAGA GGAGGCATGA 
    AAAGAAGACT GACGATGGAG AAACCAACTC ATCTAGGAGT TTAAGTCTCT 
    CTGATAACAA CGATGAAAAG AAAAAGGACA AATTCTCAAG TGGTGATGAG 
    AAAGAAGACC ACGAAAAGCA GCTGAAACAA ATACGGCTGG ATATGGAGGC 
    TTTGCGTGAC GATAAAACTC AGATGGAGGT CATTTTGGAT GAGAAGATAG 
    ATGAAGTGCG CAAGATCTCT AGCAAAGTTA ATGATCTTGA GGTGCAGCTT 
    AGAAGGGAGA AAGATGAATG CCATAGGATG ACCTCAAAGA TGAAGAAGTT 
    TATTAAAGCT CATGCTCGGT TTTTGAAGGC ACAAGAAGAA GTGAAAAGGT 
    CACAAGCTCG TTTCGAGAGG CTTGGTGATT TGCTTGCTTC AGATATTTTG 
    AAGCGTGGTG CTAATGAAGA GGGGTCCAGT GTCAATGAAG ACCTAAACGA 
    AAGGAGTCCT AATACTGCAG CAACTAAAAA GAGATCAATC CCATACTCAA 
    CAAGTGAAGA AGCGAAAGCT GTGAAGAAGA GAAGAGAGCG AGACTCTGAT 
    ACAGTGACTA GGTCAGATAA ATATGGGTCA GATGTTACAG ATTTTGATAA 
    AACAAGTAAG GGGACTGAGG CAACCAAGTC TTTATATTTG AAGAAGAAAT 
    TATGGGAAGA TGAAAAAAGT AAGCTAGGAG CCAACATTTT CACAGAAAAG 
    GTCAAAGGTT CTCCCGTCAG ACATGTTTTG CCCTCCACTG GCATGGCTGC 
    TCATGCTATT GATGATCTCA ACGAAGCTAT TGAACTGGAG GACAGACATG 
    AATCCATAGA CGCATTACTA GAAAATGATG CTGATGACAA AACTAGATCA 
    CCTGCTATTC CCCTGCAGCC ACCACCAGTG GTACAGAATG CTTATGAGCA 
    GTATGAGGGT GATGACGAGG AAGTCGATGT GGAATAAGTG GATGGCCTCG 
    TTTCTAGACA AGAGGCCTCT GATGAAGCAA TGGCGAGATT AGCATCTTCC 
    CCAGCTCCTT ATAATTAGTA CTATTAGCAT CTTGGTGTAC AAAGTGCTAT 
    CTATTTGACA TTGGGAATTC AGCTTATATT TATCAAGAAT CCTTTTGTAG 
    TAACATCCTT GGCGCTGAGA CAGCCTTAGT CAACTATGTG GAGCAGCCGT 
    ATAAATACTC CATAGAGTGT CTGGTTTGGC TAAGCTAATG ACGTATGGTA 
    TGTGCGCTCC TTCTGCCCTG GGGATTGCG

    Gene models with high sequence identity

    1. AT3G21810.1 [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
      E-value: 8e-35; Score: 145.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, CCCH-type 4.4e-05
    Coil coiled-coil 0
    superfamily CCCH zinc finger 6.2e-06
    HMMPanther UNCHARACTERIZED 5e-08
    HMMPanther RNA-BINDING PROTEIN RELATED 5e-08
    HMMSmart Zinc finger, CCCH-type 0.0016
    ProfileScan Zinc finger, CCCH-type 12.136

    See the detailed result >

    AT3G21810.1

    Model type
    Protein coding
    Short Description
    Zinc finger C-x8-C-x5-C-x3-H type family protein
    Computational Description
    Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 904 Blast hits to 850 proteins in 161 species: Archae - 9; Bacteria - 40; Metazoa - 431; Fungi - 54; Plants - 83; Viruses - 2; Other Eukaryotes - 285 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR