K31313

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31313

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31313

Determination of introduced cDNA(s)

  • J023008I17 - Rice Full-length cDNAs - Original: J023008I17

    full reading [+] show sequence

    Nucleotide sequence: J023008I17 - full reading 
    TGGGGGAATT GAGTGGTGTT TTGTGCTGAT TGGGCGTGTG GCGGTGTGGG 
    GATTTGGTAG AGGCGACGCC TAAACACTAG GGGAGTTGTC GGCTCCCCTT 
    TCTCATGTTT CTCTTAGATC TACGAATAGA GTTTCTCTTC TCCATAGGAG 
    TTGTGATTGG TCGCTCAATC GTTATTTTTT TTGGTTTGTC AGTTGGTCGA 
    TCCCACTTTC CTCAAGTTTG ATTTCTCGTT AGGAAGATCT TTCCGCTCGA 
    GAGATTCTGA TTCCTTTTCG ATTCCATCCC GTCCTTGTAT GGACGGGCCG 
    CAGTATCGGA TTAGCAAATC CATGTGAATA ACATAAGCTA GATTAACTTG 
    TATGGTATTT CCGTATTTAT ATCCCGATCC TACCATTCAC CGAAAGATTT 
    TTTTTAAAAA AAAACTTGTG TGGTAAAAAT ATTTGCCTGT GTTGTGCTAA 
    TTATGCGTTA GTTTGATGAA TGAATTTTTA CCTTGTATCT TCATGCTTAC 
    TACATGTGTG CAGTCATGGT ATCGAGGGAA CCCTTTTAAG GCTAACACAC 
    TAGGATTTCA TGATTTGTCT ATCTCTTTCC ACCACCAAGG CACCAAGCTG 
    ATATCCTGGT TGCAGCAGCA CCATGGGTGG AGAAGATGAG GTTCACGGAG 
    TGTAAAGGTC ATCTAGTGAT GGGGGTTCTG ATGGCAGGGG GATGACTTGG 
    GGCATTTTGG GGGTGAAGGA AGGCTAGGCA CAAACCCTCT TGACAGGACA 
    GCGGTGGGTT ATAGATCATG TTTAGGTTTG TTCTGGTAGG ATTCGATGGT 
    GCCAATGCAG GATGGTATTT ATCGCACCTG GACAATAAGG TTTTGGCAAA 
    CCTTTATAGT TAGATTTTTG GTTCTAGAAA GGGAATAAGT TAAACGTTCT 
    GAGGAGCATT GATGATTCGG ACCACTTGTG CCGTTAACTC TGCTTCTACT 
    GCACTCCAGC TCCTAGCGCA TAAAGCTTGT GTTTCCCTAA ATGTAACCAA 
    CCAGTTAGAG ATGAAGGGTT GTTACTATGA ATTGATATAC ATAGCTCATC 
    TTTGAGGTGA ACATGTTAAC TCGAACAATT ACATATTGCA TGGTTTCTGT 
    GACACACCGT ATACATCATC CTAGTATTAT GAACAAGCTG TTTAGCACAG 
    CTTGGATCTT GCGTCATGTT TTGCGTTGGT TCAAAGTGAA AATGGATGGA 
    AATGCTAAAG GCGGTGGGCA TTCTGAGGCA CTGAAGAACT ACAATCTTGG 
    AAGAACTTTA GGTATTGGCT CATTTGGAAA AGTGAAGATT GCAGAGCATA 
    AGCTTACAGG ACACAGAGTT GCTATAAAGA TCCTGAACCG CCGCCAAATG 
    AGAAATATGG AAATGGAGGA GAAAGCAAAG AGAGAAATCA AGATACTGAG 
    ATTGTTCATT CATCCCCATA TCATTCGCCT TTATGAGGTT ATATACACTC 
    CTACGGATAT ATATGTTGTG ATGGAGTACT GCAAGTTTGG AGAACTGTTT 
    GATTACATTG TTGAGAAAGG CAGGTTGCAG GAAGATGAGG CTCGCCGAAT 
    CTTCCAGCAG ATTATATCTG GGGTTGAATA CTGCCACAGA AACATGGTGG 
    TTCATCGTGA TCTGAAGCCA GAAAACTTGC TACTGGATTC AAAGTATAAT 
    GTAAAGCTTG CTGACTTTGG TTTGAGTAAC GTCATGCATG ATGGCCATTT 
    TTTGAAGACA AGCTGTGGGA GTCCAAACTA TGCTGCTCCA GAGGTGATCT 
    CTGGTAAATT ATATGCTGGA CCTGAGGTTG ATGTATGGAG CTGTGGAGTG 
    ATCCTTTATG CTCTCCTTTG TGGTACTCTT CCATTTGATG ATGAGAATAT 
    CCCCAACCTA TTCAAAAAGA TAAAGGGTGG TATATATACT CTCCCAAGTC 
    ATTTATCTGC TCTGGCCAGA GATTTGATCC CAAGGATGCT TGTTGTTGAT 
    CCAATGAAGA GAATCACAAT TCGTGAAATT CGAGAGCATC AGTGGTTTCA 
    GATTCGCCTT CCTCGTTACT TAGCAGTGCC TCCACCAGAC ACAGCACAGC 
    AAGCCAAAAT GATTGATGAA GATACCCTTC AAGATGTCGT AAACTTGGGT 
    TATGGAAAGG ACCATGTGTG TGAATCTCTG CGCAATAGAC TGCAGAATGA 
    GGCAACTGTT GCATATTATT TACTCTTGGA CAATCGATTC CGAGCTACCA 
    GTGGCTATTT GGGAGCAGAC TATCAAGAAT CTTTGGAGAG GAATTTTAAT 
    CGCTTTGCTT CATCGGAATC AGCAAGTTCA AATACAAGGC ATTATCTTCC 
    AGGAAGCAGT GATCCTCATG CCAGTGGTTT GCGCCCACAT TATCCTGTTG 
    AAAGAAAATG GGCTCTTGGA CTTCAGTCAC GAGCTCAACC TCGCGAGATA 
    ATGATTGAGG TCCTAAAGGC ACTTCAAGAC TTAAATGTCT CCTGGAAGAA 
    GAATGGACAG TACAACATGA AATGCAGATG GAGCGTTGGG ACTCAGGCCA 
    CTGATATGTT AGATGTTAAC AACAGCTTTG TTGATGACTC AATCATAATG 
    GATAACGGTG ATGTAAATGG GAGGCTACCT GCTGTGATCA AGTTTGAAAT 
    CCAGACCAGA GACGAGAAGT ATCTGCTGGA TATGCAGAGA GTTACGGGGC 
    CTCAGCTCCT TTTCCTGGAC TTCTGTGCAG ACTTCCTTAC CAAGCTGAGG 
    GTTCTATAGT ACCCTTGTGT TGGCTTCAGT GAAAAACCAA ACCTAGGGTT 
    TTATCATGTG CGGTTTTTCA CTGCAATAAT GAATAAAGGA CACCATGTAA 
    ATAGGCAGCT GTGACTTTCT TCCCAGTCCT TAGACAGCGA AGGTTGTTGT 
    TTGAGTGACT AGTGTTGTGT TAAGCACCAA AATGTTGGTT GTTACAGACT 
    TACATAGTAT ATAGATCTTT ATAAGCT

    Gene models with high sequence identity

    1. AT3G01090.2 [+] show detail - SNF1 kinase homolog 10
      E-value: 0; Score: 763.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-70
    superfamily Protein kinase-like domain 7.3e-97
    superfamily Kinase associated domain 1, KA1 4e-06
    HMMPfam Serine/threonine-protein kinase-like domain 3.9e-80
    HMMPfam Kinase-associated KA1 2.1e-12
    ProfileScan Protein kinase, catalytic domain 54.704
    ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 12.089
    ProfileScan Kinase-associated KA1 10.686
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 2e-110
    HMMSmart Tyrosine-protein kinase, catalytic domain 1e-14
    HMMPanther Protein kinase, Snf1-like AMPK 1e-251
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 1e-251

    See the detailed result >

    AT3G01090.2

    Model type
    Protein coding
    Short Description
    SNF1 kinase homolog 10
    Curator Summary
    encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase
    Computational Description
    SNF1 kinase homolog 10 (KIN10); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: nuclear ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Protein kinase, ATP binding site (InterPro:IPR017441), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 133590 Blast hits to 131265 proteins in 4759 species: Archae - 166; Bacteria - 15153; Metazoa - 49555; Fungi - 13420; Plants - 32561; Viruses - 542; Other Eukaryotes - 22193 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR