K31445

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31445

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31445

Determination of introduced cDNA(s)

  • J013136L18 - Rice Full-length cDNAs - Original: J013136L18

    full reading [+] show sequence

    Nucleotide sequence: J013136L18 - full reading 
    GACACGCTGC TCTCGCTGCC AGTCCGCCAC CCACCGCCGC CCACCGCCGA 
    GCGGCCTCCC CGCGCGGCGA GGCCAAACCC TCCCATGTCC ACCCCGGCCG 
    GCGTGGCGCC CCGCCGCTCC TCCAGGCTCG CCTCCAGCGC TCCTCCGCTC 
    GGAGCCGGCC AGCCTTCCTC CTCCCCACTT CCTCGGCGCC GCCGCCGCCG 
    CGCTTCGCCG TCTGGCTGCG CCAGAGAGGT TGACAACTCG CCTCCTCCGG 
    TGGTCATCTT AGATGACAAC GAAATGGAGC AGCATGTTGA GGCAGAAGAA 
    ATGAAGAAGC AAGGGGAAGA GAGTGTGGAG GCAAATGAAG CAGAGGAGAA 
    GGACAAGGAT GCGGAGGTCT TAGAGGAACT ACCTGATTGG CTTCCTGATG 
    GTTGGATCAT GGAGGTACGT TGTGGCGACA ACGGCAACAT CTACCGGTAT 
    TACACTTCCC CGGTGTCAGG ATACACATTC TCTACAAAGA TGGAGACACT 
    ACATTATCTT TTTTCGGAGA TGGATGAGCG TGTGATGGAG TCTCAGGCGT 
    GCGCCGATGA CAATGAGCTT CATAGAATGC ACACATGGCT TCCAGATGGG 
    TGGGCAATTG AAGTCAGAGC TGGGGGTAAG AAGATGGAAA AAATGTACAA 
    GTTCTATGTT CATCTGCCTA CTGGAATGCG GTTCTTGTCG AAAGAAAATG 
    TACTGCTCTA TTCTAATGAG GGGAAGATTT CCAGATGTGA TGTAAAGGGT 
    TTGTGTGATA CAAGCTCTGA AGATAATATT CTTGCAATGG TAGAATTTAA 
    TCCAGATGGG CTTCCAGAAG GATGGGTGAA GGAAATAATA TTTAGAAAGT 
    GCAATGATGG AATTAGGAAA GACCCGTATT ATACTGATCC TGTTAGTCGT 
    CATGTATTCC GCACACTCAA GTCTGTAATC AACTACCTTG AAACTGGACA 
    AATCACTAAA CATGCCTATA TTCCGAGGAG AAGCGTTACT GATATGTACT 
    CTTTTGACAG CCTCAAAGTA TGCTGAAAAG ACTGAAAATA CAAGGAAAAG 
    CAAAGAAAAA GTCTGTAGGA GCATCGGTCA AAGGCAAGAA ACTATCTAAT 
    GGCCTGGCAT CAAATAACTG TATGTCTTCT GGGTTGGATC CTGAAATCGG 
    GCCAGAAGAA AGGAAACTTG GAACTGTTAA ATCCATAACC AAAGAAGCAG 
    TTAACTCAGA TACTATCAAG CGATCAAGAG GAAGGCCACC GAAAACCTTG 
    ATGCCAACTA TTGAAAGCAC CAAACCTGAG ATTGCATTAG TCACGTCAGA 
    GGCTATCAAG AGATCAAGAG GTAGGCCATG GGAAACCATG ATACAACTTA 
    TGAAAGCATT AAAAGTATGA AGGTTATTGG TAAAACAACA ATGAACTCAG 
    GTCATAGCAT GGCTAAACAG GGCTGTAAAA TTTGTATAGC AAAGATAAGG 
    ACTAAAAGCA GTGAACAGCG AAGTCAAGCA AAGAAATGCC CTATACTAGA 
    GGTAGTTAAC AGGAAAAAAG TGGAGCGAAT TAAATTAAGA AATATTAGAT 
    GCAAATAATA AAATGTCACT TGGTGCCTGT CCCAATGCAC TTTTTATGAC 
    CAATAGAAAG TTTAAAAGCA CTAAGAAAAT CAGAAATGTT GTGGTTTTGA 
    AGCACATGTA CATCGAGGAT GCTTTATTAC AACAACTATT CTGTTTGAAA 
    GCTGACAAGT GAAATGAACA TCTCTAACCA ATCCCTCATT AACTAGTTAT 
    TTTTTGTCAT GCTAGTGTTT CTCTGTTGTT ATAATCGCCA TAACATCTTT 
    GTCTTGTGCT ATTAAATATA AGCTGATTGC TGCTCTGGTC ACCATGTGTG 
    CTGCATGTGA CTTGGAGATT CATATGTAGT CCTGATTATT CCATCATACA 
    TTCCTGAACT TTAGTTAGTT TCTTGCAGTA CGTATCATGT TGTTGTGGAG 
    ATCACACAGA ATGGTGGGAT GTCGCCATTT GTTGTGTGAT CTGCCAATGA 
    ATGTTTTCCT GCTTTTCTGG TTTTATTTCC CTGTAGCTGA ACTGAAATGT 
    TTCTAGTAAT GGATAGGGGA TGAGCTTTGC TCTTCTGTTT CC

    Gene models with high sequence identity

    1. AT5G52230.2 [+] show detail - methyl-CPG-binding domain protein 13
      E-value: 2e-06; Score: 52.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Methyl-CpG DNA binding 1.9e-05
    HMMPfam Methyl-CpG DNA binding 9.3e-05
    superfamily DNA-binding, integrase-type 6.2e-20
    superfamily DNA-binding, integrase-type 7.5e-11
    superfamily DNA-binding, integrase-type 4.7e-09
    ProfileScan Methyl-CpG DNA binding 12.137
    ProfileScan Methyl-CpG DNA binding 13.772

    See the detailed result >

    AT5G52230.2

    Model type
    Protein coding
    Short Description
    methyl-CPG-binding domain protein 13
    Curator Summary
    Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
    Computational Description
    methyl-CPG-binding domain protein 13 (MBD13); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739).
    Link
    InterPro Scan - TAIR