K31515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31515

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31515

Determination of introduced cDNA(s)

  • J023104F08 - Rice Full-length cDNAs - Original: J023104F08

    full reading [+] show sequence

    Nucleotide sequence: J023104F08 - full reading 
    GAAAAGCGCA AGAGACTCGC AACGCAGGTC AGAGCGGAAG GGGAGAAGAA 
    GGAGGTGCTC CTCTCGAGTT TGGAGAAAAT TTCCCCCGCA GAGGCCTCCG 
    CTTGCTCGCG GAGATGGCGA TGACCGTCGA AGGTGAGGGT CGCTCTGAGT 
    TTCCCTCCCC CATCTAAGAT TTGCTCAATT GCTAGTCTGG TTCTGTTCCC 
    GATTTCGGCG TCGTTTGGGC TCTCCGATTC GAGTGTCGGG GTGGCGGGGG 
    ATTGGGCGGC TAGGGTTCCG GTTCGAGTTT GGTGTTACGA TTGGCTGTGC 
    TCGCTGGACT TGCATTTATG TTCTCAACAA GTATTCTTTT GCAAATACTG 
    GCTTGTGCTC TGTACAATAA TTGGTGGCCT ATGTTAGCAG CTCTTATGTA 
    TGTCCTTGTA CCGATGCCAT GCCTATTCTT CGGTGGTGGA TCTACCCAGT 
    TCTTTACTAG CAGAGATGGT GGAGGGTGGT TCAATGCTGC AAAATTCCTG 
    ACTGGTGCAT CTGCCATGGG AAGCATTGCA ATCCCAGCAA TTCTGAGGCA 
    CGCTGGCCTA ATTGAGACTG GAGCCATGTT CATCGAGTTC ACGTCCTTCT 
    TCATCCTTGT ATGCACAGTG ATGTGCTTCC ATAGAGCTAC GCTGGATGAA 
    GATTGGTAAA AGGCTCGAGG CACATGGACA CAAGAAGGTA AATCTGTTTC 
    ATGGTTTGCT TCTCAGCACG TACAAGAGAA ATTCCTTAGT GGACACTAAC 
    ATGGACATGT GTACAAAGAA GCAAATATTT GAGTTGGCGT GACTGTCTGT 
    ATAAATGCTC AAAGATTTGC TGATCTAGCG ACAATGCCAA TGTTCTATGT 
    GCACTTTTCA TGTGAATACT CCTCACATGA TCTATGGGCA ACCTGTCAGC 
    CATCCGTGTG

    Gene models with high sequence identity

    1. AT3G11530.2 [+] show detail - Vacuolar protein sorting 55 (VPS55) family protein
      E-value: 2e-45; Score: 179.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Vacuolar protein sorting 55 3.5e-33
    HMMPanther Vacuolar protein sorting 55 2.7e-39

    See the detailed result >

    AT3G11530.2

    Model type
    Protein coding
    Short Description
    Vacuolar protein sorting 55 (VPS55) family protein
    Computational Description
    Vacuolar protein sorting 55 (VPS55) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT1G32410.5); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR